Table 2 The genome completeness score assessed by BUSCO on all Ceratocystidaceae genomes
From: Phylogenomic incongruence in Ceratocystis: a clue to speciation?
Species name | Code | BUSCO notation (%) | Complete SCGa | Complete DGb | Fragmented | Missing | |||
|---|---|---|---|---|---|---|---|---|---|
Completed | Duplicated | Fragmented | Missing | ||||||
C. albifundus | CALB1 | 97 | 7.5 | 1.5 | 1 | 1400 | 109 | 23 | 15 |
CALB2 | 97 | 7.5 | 1.1 | 1.4 | 1401 | 108 | 16 | 21 | |
CALB4 | 97 | 7.8 | 1.3 | 1.2 | 1401 | 113 | 19 | 18 | |
CALB5 | 97 | 7.6 | 1.2 | 1.2 | 1402 | 110 | 18 | 18 | |
CALB6 | 97 | 11 | 1.2 | 1.2 | 1402 | 172 | 18 | 18 | |
C. eucalypticola | CEUC | 98 | 7.5 | 0.6 | 1 | 1413 | 108 | 10 | 15 |
C. fimbriata | CFIM1 | 97 | 7.4 | 0.7 | 1.4 | 1406 | 107 | 11 | 21 |
CFIM2 | 98 | 7.5 | 0.4 | 1 | 1416 | 109 | 7 | 15 | |
C. harringtonii | CHAR | 98 | 7.1 | 0.9 | 0.9 | 1410 | 103 | 14 | 14 |
C. manginecans | CMAN1 | 97 | 7.8 | 1.2 | 0.9 | 1407 | 113 | 18 | 13 |
CMAN2 | 97 | 7.5 | 1 | 1 | 1408 | 109 | 15 | 15 | |
CMAN3 | 98 | 7 | 0.8 | 0.8 | 1414 | 101 | 12 | 12 | |
C. platani | CPLA | 98 | 7.9 | 0.8 | 1.1 | 1410 | 115 | 12 | 16 |
C. smalleyi | CSMA | 98 | 12 | 0.9 | 0.7 | 1413 | 182 | 14 | 11 |
D. virescens | DVIR | 98 | 6.5 | 0.9 | 0.4 | 1418 | 94 | 13 | 7 |
E. polonica | EPOL | 98 | 6.7 | 0.6 | 0.9 | 1415 | 97 | 10 | 13 |
E. laricicola | ELAR | 98 | 7.3 | 0.5 | 0.9 | 1417 | 105 | 8 | 13 |