The effect of DNA methylation on bumblebee colony development

BMC Genomics

Table 1 Overview of mapping efficiency, methylation rates in CpG, CHG and CHH contexts, number of significantly methylated loci and methylation fraction per loci for the 14 workers subjected to WGBS

Treatment	Colony	Worker id	Mapping efficiency	Methylation rate (CpG)	Methylation rate (CHG)	Methylation rate (CHH)	N of significantly methylated loci	Total Loci	%	Methylation fraction (numCs/CT)
D	5	w1	44.4	1.00	0.80	0.90	3044	3,534,447	0.09%	0.44
D	1	w3	43	0.90	0.71	0.80	2835	3,515,033	0.08%	0.45
D	1	w4	41.7	0.79	0.62	0.70	1969	2,720,084	0.07%	0.47
D	1	w5	38.5	0.88	0.71	0.80	1478	2,658,036	0.06%	0.41
D	5	w2	43.1	0.86	0.69	0.77	2664	2,889,178	0.09%	0.49
D	5	w4	38.4	0.88	0.71	0.80	1706	2,723,798	0.06%	0.44
D	5	w5	35.3	0.86	0.69	0.78	1921	2,321,704	0.08%	0.46
C	5	w5	39.4	0.46	0.35	0.40	1073	2,248,205	0.05%	0.44
C	2	w2	36.2	0.46	0.36	0.42	1270	2,741,953	0.05%	0.43
C	2	w1	38.9	0.41	0.32	0.37	1145	3,463,111	0.03%	0.42
C	2	w4	35.3	0.42	0.32	0.38	1006	2,592,099	0.04%	0.43
C	5	w2	36.8	0.42	0.32	0.38	855	2,849,397	0.03%	0.44
C	5	w3	39	0.43	0.33	0.38	935	2,063,422	0.05%	0.41
C	5	w4	42.6	0.83	0.66	0.74	1918	2,864,878	0.07%	0.45

ISSN: 1471-2164