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Table 2 Data samples from mouse hematopoietic differentiation [19] (top) and human pancreatic differentiation [20, 21] (bottom). For each genomic data type and each time point the number of replicates is given

From: Inferring time series chromatin states for promoter-enhancer pairs based on Hi-C data

Data type

CMP

MEP

EryA

GMP

Granu

Mono

H3K27ac

4

1

2

2

2

4

H3K4me1

3

1

2

2

3

4

H3K4me2

3

2

1

3

2

3

H3K4me3

4

2

1

3

2

4

ATAC-seq

3

3

1

2

2

1

Data type

D0

D2

D5

D10

  

H3K27ac

2

2

2

2

  

H3K27me3

2

2

2

2

  

H3K4me1

2

2

2

2

  

H3K4me3

2

2

2

2

  

Input

2

2

2

2

  

ATAC-seq

2

2

2

2

  

RNA-seq

3

3

3

3

  

Hi-C

2

2

2

2

  
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BMC Genomics

ISSN: 1471-2164

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