From: An across-breed validation study of 46 genetic markers in canine hip dysplasia
Breed (N in analysis) | SNPs with significant associations with CHD | Location in CanFam3.1 | Reference | Allele (minor / major) | OR (95% CI) | P-values: raw / permuted |
---|---|---|---|---|---|---|
Finnish Lapphund(303) | HD_25_51006290 ss7212922151 ss7212922146 ss7212922122 ss7212922154 | CFA25: 47983231 CFA26: 14157064 CFA33: 4052295 CFA33: 7967486 CFA34: 11240092 | [12] [7] [8] [8] [8] | G/A T/C C/T C/T A/G | 5.56 [1.22–25.28] 1.63 [1.14–2.33] 1.50 [1.09–2.07] 0.68 [0.49–0.94] 0.67 [0.48–0.92] | 0.013 / 0.021 a 6.8 × 10–03 / 9.7 × 10–03 a 0.013 / 0.012 a 0.019 / 0.021 a 0.015 / 0.019 a |
Golden Retriever(235) | ss7212922155 ss7212922147 ss7212922135 | CFA11: 54489194 CFA12: 16410934 CFA14: 56572744 | [4] [11] [6] | G/A A/G T/C | 0.57 [0.37–0.89] 0.56 [0.33–0.97] 1.55 [1.02–2.35] | 0.014 / 0.013 b 0.037 / 0.033 b 0.040 / 0.034 b |
Lagotto Romagnolo(194) | ss7212922120 ss7212922155 ss7212922151 | CFA1: 45382633 CFA11: 54489194 CFA26: 14157064 | [13] [4] [7] | C/Ac G/A T/C | 0.59 [0.36–0.95] 0.60 [0.38–0.94] 2.00 [1.08–3.71] | 0.029 / 0.028 a 0.025 / 0.040 a 0.025 / 0.028 a |
Samoyed(149) | ss7212922144 ss7212922163 | CFA3: 40302288 CFA24: 25973438 | [11] [7] | A/G C/G | 0.47 [0.28–0.78] 1.75 [1.06–2.90] | 3.2 × 10–03 / 7.3 × 10–03 a 0.029 / 0.033 a |
Spanish Water dog(114) | ss7212922131 ss7212922122 | CFA21: 40146141 CFA33: 7967486 | [10] [8] | C/T C/T | 0.51 [0.29–0.89] 0.48 [0.25–0.90] | 0.017 / 0.014 b 0.023 / 0.022 b |
Great Dane(113) | ss7212922137 ss7212922133 | CFA1: 46279297 CFA14: 20864104 | [13] [6] | G/A C/G | 2.14 [1.15–3.97] 5.07 [1.04–24.73] | 0.016 / 0.017 b 0.045 / 0.036 b |
Labrador Retriever(100) | ss7212922118 ss7212922126 ss7212922153 ss7212922141 ss7212922163 ss7212922154 | CFA1: 45161186 CFA1: 67883139 CFA1: 67942900 CFA11: 29908777 CFA24: 25973438 CFA34: 11240092 | [13] [9] [9] [4] [7] [8] | C/G A/T T/A A/T G/C G/A | 1.83 [1.01–3.29] 2.51 [1.09–5.74] 2.55 [1.11–5.86] 0.47 [0.25–0.87] 1.87 [1.07–3.28] 0.52 [0.27–0.97] | 0.046 / 0.037 b 0.030 / 0.023 b 0.027 / 0.020 b 0.016 / 0.017 b 0.029 / 0.023 b 0.040 / 0.027 b |
Karelian Bear dog(97) | ss7212922161 ss7212922156 ss7212922152 ss7212922155 | CFA1: 67876393 CFA8: 28489063 CFA8: 28489546 CFA11: 54489194 | [12] [12] [12] [4] | A/C T/C A/C A/G | 0.46 [0.23–0.91] 0.41 [0.17–0.96] 0.41 [0.17–0.96] 2.94 [1.41–6.10] | 0.025 / 0.019 b 0.041 / 0.035 b 0.041 / 0.035 b 3.9 × 10–03 / 4.3 × 10–03 b |
Finnish Hound (102) | ss7212922123 | CFA17: 45022358 | [4] | T/G | 2.38 [1.31–4.34] | 4.1 × 10–03 / 8.7 × 10–03 a |