Orthology and synteny analysis of receptor-like kinases “RLK” and receptor-like proteins “RLP” in legumes

BMC Genomics

Table 1 Summary of RLK and RLP genes among species in synteny blocks

Species	RLK no blocks	RLK in blocks^a	Freq. range	RLK-nonRD no blocks	RLK-nonRD in blocks^a	Freq. range	RLP no blocks	RLP in blocks^a	Freq. range
CC	38	166	1 to 9	8	21	1 to 7	16	50	1 to 8
GM	57	907	1 to 13	17	148	1 to 9	54	336	1 to 9
MT	116	525	1 to 9	88	95	1 to 9	154	164	1 to 7
PV	7	520	1 to 10	0	113	1 to 8	6	193	1 to 8
VA	8	427	1 to 9	3	78	1 to 7	13	136	1 to 8
VR	8	329	1 to 9	3	62	1 to 7	12	141	1 to 9
VU	8	563	1 to 10	0	142	1 to 8	6	257	1 to 9
VV	75	259	1 to 10	21	37	1 to 5	87	72	1 to 8
AT	333	96	1 to 3	35	10	1 to 2	119	28	1 to 3
SL	145	245	1 to 7	47	36	1 to 3	91	70	1 to 7

The frequency range “Freq range” column describes the number of times a gene was present in different synteny blocks among species. Because the synteny blocks were calculated pairwise, and the same gene can be present multiple times, these values give a frequency reference. The RLK genes were split into two RLK and RLK-nonRD classes. ^aGene numbers reported are non-redundant; however, a gene can be present in one or more synteny blocks

ISSN: 1471-2164