Table 2 The basic chloroplast genome information of six Atractylodes species
From: Chloroplast genome variation and phylogenetic relationships of Atractylodes species
Category for genes | Group of genes | Name of genes |
|---|---|---|
Photosynthesis related genes | Rubisco | rbcL |
PhotosystemI | psaA,psaB,psaC,psaI,psaJ | |
Assembly/stability of photosystemI | *ycf3,ycf4 | |
PhotosystemII | psbA,psbB,psbC,psbD,psbE,psbF,psbH,psbI,psbJ,psbK,psbL,psbM,psbN,psbT,psbZ | |
ATP synthase | atpA, atpB, atpE, *atpF, atpH, atpI | |
cytochrome b/f compelx | petA, *petB, *petD, petG, petL, petN | |
cytochrome c synthesis | ccsA | |
NADPH dehydrogenase | *ndhA, *ndhB, ndhC, ndhD, ndhE, ndhF,ndhG, ndhH, ndhI, ndhJ, ndhK | |
Transcription and translation related genes | transcription | rpoA, rpoB, *rpoC1, rpoC2 |
ribosomal proteins | rps2, rps3, rps4, rps7, rps8, rps11, *rps12, rps14,rps15, *rps16, rps18, rps19,*rpl2, rpl14, *rpl16, rpl20, rpl22, rpl23, rpl32, rpl33,rpl36 | |
translation initiation factor | infA | |
RNA genes | ribosomal RNA | rrn5, rrn4.5, rrn16, rrn23 |
transfer RNA | *trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, *trnG-UCC, trnG-GCC, trnH-GUG, trnI-CAU, *trnI-GAU,*trnK-UUU, trnL-CAA, *trnL-UAA, trnL-UAG, trnfM-CAUI,trnM-CAU, trnN-GUU, trnP-UGG, trnQ-UUG,trnR-ACG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU,trnT-UGU, trnV-GAC, *trnV-UAC, trnW-CCA, trnY-GUA | |
Other genes | RNA processing | matK |
carbon metabolism | cemA | |
fatty acid synthesis | accD | |
proteolysis | *clpP | |
Genes of unknown function | conserved reading frames | ycf1, ycf2 |