Fig. 3
From: Impact of short-read sequencing on the misassembly of a plant genome
Relationships between genomic features and HC, LC and BG regions. a Differences in density distributions of important features between HC/LC/BG regions. ***: p < 1e-3. b Correlation between densities of HC/LC/BG regions and other genome features across the genome in bins of 500Kb. Color scale: Spearman’s rank correlation coefficient (ρ). c Z-scores of observed ρ calculated using the distribution of 1000 random Spearman’s ρ as the null distribution. First, regions were selected so they were the same number and length as true HC/LC regions (not overlapping with each other). The remaining genomic regions not occupied by the selected random regions were taken as randomly expected BG regions. Then correlation between densities of randomly selected regions and a genomic feature was calculated to establish the null distribution