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Fig. 4 | BMC Genomics

Fig. 4

From: Impact of short-read sequencing on the misassembly of a plant genome

Fig. 4

Sequences found in HC regions and their functions. a Z-score calculated by comparing observed total number of features in true HC regions (red dots) to normalized distributions (boxplots) of the numbers of different genomic features overlapped with 10,000 randomly sampled BG regions (based on the number and length distribution of HC regions). b Top 20 Pfam domains with highest Log Likelihood Ratio (LLR, see upper-left insert and Methods), indicating enrichment within HC regions. c Top 20 GO terms with highest LLR. d 9 metabolic pathways with LLR > 1. Orange and magenta fonts indicate mitochondria/plastid and transcription/translation related processes, respectively, and green font shows specialized metabolism pathway

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