Genomic predictions for fillet yield and firmness in rainbow trout using reduced-density SNP panels

BMC Genomics

Table 3 Linkage disequilibrium and effective population size by chromosome. Chromosome 5 had the highest mean LD estimate (r²) and the smallest effective population size

CHR	Number of SNPs	Size (bp)	Mean (r²)	Ne
1	1298	80,480,703	0.32	81
2	1580	85,221,383	0.26	92
3	1409	84,915,088	0.25	104
4	1380	84,297,858	0.27	80
5	2060	91,890,047	0.34	18
6	1189	77,071,016	0.21	105
7	1278	79,714,361	0.24	91
8	1655	83,683,676	0.27	94
9	1339	68,350,947	0.30	110
10	1169	64,390,894	0.26	114
11	1119	79,489,160	0.26	87
12	1711	81,222,362	0.24	98
13	1069	47,531,856	0.25	128
14	1284	80,268,421	0.26	94
15	913	59,307,523	0.25	100
16	1572	70,790,504	0.27	113
17	1379	76,497,411	0.26	104
18	1133	61,193,526	0.25	125
19	872	58,039,566	0.22	147
20	677	40,981,438	0.26	105
21	783	51,606,644	0.23	165
22	792	48,370,041	0.25	180
23	602	48,805,734	0.34	97
24	633	40,198,439	0.25	171
25	1330	82,450,733	0.26	97
26	453	30,795,589	0.23	166
27	657	45,210,144	0.27	127
28	843	40,702,581	0.23	153
29	731	42,409,034	0.26	141
Average	1135	65,030,575	0.26	113
SD	389	17,941,345	0.031	34

ISSN: 1471-2164