Table 3 The target promoter of LOC_Os01g37325.1-derived phasiRNAs
From: Degradome sequencing-based identification of phasiRNAs biogenesis pathways in Oryza sativa
24-nt phasiRNAs_ID | PhasiRNAs_sequences | Binding_sites_ on_promoter | Prmoter_location | Target_genes | Target annotation |
|---|---|---|---|---|---|
LOC_Os01g37325.1(1684) 24 5’D12(+) | AUCAUGACUUGGGUAUUACGUUUC | 111–134 | chr2_24766608–24,766,807 | LOC_Os02g40860.1 | Casein kinase I1 (CKI1) |
LOC_Os01g37325.1(1684) 24 5’D10(+) | AGUCCUGGUUUGAUAAGAUUGUAA | 63–86 | |||
LOC_Os01g37325.1(1684) 24 5’D9(+) | AGUAGAUUUAGGAAACCGAUACCG | 39–62 | |||
LOC_Os01g37325.1(1665) 24 5’D13(+) | ACUAGUUAUAGGGGAUAACUUAUA | 154–177 | |||
LOC_Os01g37325.1(1665) 24 5’D11(+) | GACUUGGGUAUUACGUUUCCCUGU | 106–129 |