Skip to main content

Table 3 Examples of genes that exhibit the top 5% expression levels in the ovaries and top 5% expression levels in the testes (but are not in the top 5% of any other tissue type, Top5One-tissue) in G. bimaculatus that have elevated use of a non-optimal codon with high tRNAs counts (Nonopt-codon↑tRNAs status; elevated use in this table indicates the RSCU in a gene is ≥1.5). The codons include GTG for Val, GGC for Gly, and CTG for Leu (RSCU values ≥1.5). Genes are listed that have an identified putative D. melanogaster (Dmel) ortholog (best match BLASTX e < 10−3 [73] and a known gene name at FlyBase [97]

From: Adaptation of codon and amino acid use for translational functions in highly expressed cricket genes

GB ID Dmel ID Gene Name
Ovaries- GTG for Val (RSCU ≥ 1.5)
 GBI_17906-RA FBgn0039889 ADP ribosylation factor-like 4 (Arl4)
 GBI_01735-RA FBgn0261788 Ankyrin 2 (Ank2)
 GBI_16610-RA FBgn0024227 aurora B (aurB)
 GBI_20301-RA FBgn0000182 Bicaudal C (BicC)
 GBI_10942-RA FBgn0024491 Bicoid interacting protein 1 (Bin1)
 GBI_05907-RA FBgn0000337 cinnabar (cn)
 GBI_11302-RA FBgn0030608 Lipid storage droplet-2 (Lsd-2)
 GBI_09650-RA FBgn0031145 Nuclear transport factor-2 (Ntf-2)
 GBI_06633-RB FBgn0031530 Polypeptide GalNAc transferase 2 (Pgant2)
 GBI_13292-RA FBgn0039214 puffyeye (puf)
 GBI_11680-RC FBgn0004855 RNA polymerase II 15kD subunit (RpII15)
 GBI_13051-RB FBgn0025697 scavenger receptor acting in neural tissue and majority of rhodopsin is absent (santa-maria)
 GBI_03901-RD FBgn0003312 shadow (sad)
 GBI_03557-RA FBgn0037802 Sirtuin 6 (Sirt6)
 GBI_00841-RB FBgn0003714 technical knockout (tko)
Testes- GTG for Val (RSCU ≥ 1.5)
 GBI_00920-RA FBgn0038984 Adiponectin receptor (AdipoR)
 GBI_00615-RA FBgn0263231 belle (bel)
 GBI_03558-RA FBgn0032820 fructose-1,6-bisphosphatase (fbp)
 GBI_04579-RA FBgn0030268 Kinesin-like protein at 10A (Klp10A)
 GBI_09377-RA FBgn0015754 Lissencephaly-1 (Lis-1)
 GBI_12141-RA FBgn0038167 Lkb1 kinase (Lkb1)
 GBI_02406-RA FBgn0263510 No child left behind (nclb)
 GBI_09426-RA FBgn0261588 pou domain motif 3 (pdm3)
 GBI_08602-RA FBgn0036257 Rho GTPase activating protein at 68F (RhoGAP68F)
    GBI_05329-RA FBgn0032723 short spindle 3 (ssp3)
Ovaries- GGC for Gly (RSCU ≥ 1.5)
 GBI_17906-RA FBgn0039889 ADP ribosylation factor-like 4(Arl4)
 GBI_06216-RA FBgn0031392 Apoptosis inducing factor (AIF)
 GBI_20301-RA FBgn0000182 Bicaudal C (BicC)
 GBI_11302-RA FBgn0030608 Lipid storage droplet-2 (Lsd-2)
 GBI_05398-RA FBgn0029687 VAMP-associated protein of 33 kDa ortholog A(Vap-33A)
 GBI_09822-RD FBgn0261458 capulet (capt)
 GBI_01828-RA FBgn0011296 lethal (2) essential for life (l(2)efl)
 GBI_10179-RA FBgn0024841 pterin-4a-carbinolamine dehydratase (pcd)
 GBI_13051-RB FBgn0025697 santa-maria
Testes- GGC for Gly (RSCU ≥ 1.5)
 GBI_15155-RA FBgn0016930 Dual-specificity tyrosine phosphorylation-regulated kinase 2 (Dyrk2)
 GBI_09377-RA FBgn0015754 Lissencephaly-1(Lis-1)
 GBI_00388-RA FBgn0010288 Ubiquitin carboxy-terminal hydrolase (Uch)
 GBI_09426-RA FBgn0261588 Pou domain motif 3 (pdm3)
 GBI_05329-RA FBgn0032723 short spindle 3 (ssp3)
Ovaries- CTG for Leu (RSCU ≥ 1.5)
 GBI_17906-RA FBgn0039889 ADP ribosylation factor-like 4 (Arl4)
 GBI_01735-RA FBgn0261788 Ankyrin 2 (Ank2)
 GBI_06216-RA FBgn0031392 Apoptosis inducing factor (AIF)
 GBI_07513-RA FBgn0005666 bent (bt)
 GBI_20301-RA FBgn0000182 Bicaudal C (BicC)
 GBI_05907-RA FBgn0000337 cinnabar (cn)
 GBI_11302-RA FBgn0030608 Lipid storage droplet-2 (Lsd-2)
 GBI_16524-RA FBgn0027786 Mitochondrial carrier homolog 1 (Mtch)
 GBI_09650-RA FBgn0031145 Nuclear transport factor-2 (Ntf-2)
 GBI_05851-RA FBgn0003074 Phosphoglucose isomerase (Pgi)
 GBI_06633-RB FBgn0031530 Polypeptide GalNAc transferase 2 (pgant2)
 GBI_09582-RA FBgn0036187 RIO kinase 1 (RIOK1)
 GBI_13051-RB FBgn0025697 santa-maria
 GBI_03901-RD FBgn0003312 shadow (sad)
Testes- CTG for Leu (RSCU ≥ 1.5)
 GBI_00369-RA FBgn0003884 Alpha-Tubulin at 84B (alphaTub84B)
 GBI_15155-RA FBgn0016930 Dyrk2
 GBI_03558-RA FBgn0032820 fructose-1,6-bisphosphatase (fbp)
 GBI_10438-RA FBgn0038923 mitochondrial ribosomal protein L35 (mRpL35)
 GBI_09426-RA FBgn0261588 Pou domain motif 3 (pdm3)
 GBI_08602-RA FBgn0036257 Rho GTPase activating protein at 68F (RhoGAP68F)
 GBI_05329-RA FBgn0032723 short spindle 3 (ssp3)
 GBI_00450-RA FBgn0024289 Sorbitol dehydrogenase 1 (Sodh-1)
 GBI_14282-RA FBgn0029763 Ubiquitin specific protease 16/45 (Usp16–45)