Investigation of ancestral alleles in the Bovinae subfamily

BMC Genomics

Table 2 List of whole genome sequences data

Name	Species	N	Avg. Mbases	Avg. read length	Mapped reads (%)	Clean reads^a (%)	Coverage	BioProject	Reference
Taurine cattle	Bos taurus	23	18,913	248	98.37	78.61	5x	PRJNA238491, PRJNA277147	[44, 45]
Banteng	Bos javanicus	5	16,596	250	98.36	84.30	5x	PRJNA427536	[46]
Gaur	Bos gaurus	4	18,428	300	98.50	71.61	5x	PRJNA427536	[46]
Yak	Bos grunniens	13	22,177	201	98.51	79.47	4x	PRJNA285834	[47]
American Bison	Bison bison	4	13,364	200	98.51	82.81	4x	PRJNA427536	[46]
European Bison	Bison bonasus	5	18,113	250	98.51	89.67	5x	PRJNA427536	[46]
Gayal	Bos frontalis	4	18,610	250	98.49	86.71	5x	PRJNA427536	[46]
Aurochs	Bos taurus primigenius	2	17,105	62	98.51	45.17	3x	PRJNA294709	[32]
Zebu cattle	Bos taurus indicus	8	10,863	428	98.60	76.98	4x	PRJNA507259, PRJNA427256	[48]

^aReads remaining after base quality score recalibration process and used for calling variants

ISSN: 1471-2164