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Fig. 2 | BMC Genomics

Fig. 2

From: A 44-kb deleted-type copy number variation is associated with decreasing complement component activity and calf mortality in Japanese Black cattle

Fig. 2

CNVR_221 overlapping with C1RL, a pseudogene and an IncRNA on chromosome 5. a Regional SNP plot of CNVR_221. The mean log R ratio is indicated on the y-axis. The mean log R ratio of CNVR_221 animals (magenta) and the mean log R ratio of non-CNVR_221 animals (blue) were calculated from 31 animals. SNP positions were based on the ARS-UCD1.2 assembly of the bovine genome. b Transcripts in the CNVR_221 region were visualized using Custom Genome Browser. The RefSeq ID and gene symbol were labeled. c Alignment of sequence read by WGS derived from 5 CNVR_221 homozygotes and a wild-type animal. d qPCR confirmation of CNVR_221. The leftmost bar represents a calibrator animal (JB_001), which is assumed to contain two copies of the DNA. The x-axis represents the animals

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BMC Genomics

ISSN: 1471-2164

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