Transcriptome analysis and molecular mechanism of linseed (Linum usitatissimum L.) drought tolerance under repeated drought using single-molecule long-read sequencing

Table 2 The number of DEGs related to proline biosynthesis, response to stress, cell response to stress, photosynthesis, and carbohydrate catabolism, in Z141 and NY-17

Trait Name	Description	Up-DEGs				Down-DEGs
		Z141		NY-17		Z141		NY-17
		DS	RD	DS	RD	DS	RD	DS	RD
proline biosynthesis	proline metabolic process	12	15	11	14	0	0	0	0
proline biosynthesis	proline biosynthetic process	12	13	11	12	0	0	0	0
response to stress	response to acid chemical	44	77	34	65	0	0	0	0
	response to stress	180	276	123	222	0	0	0	0
	response to water	17	25	12	18	0	0	0	0
	response to inorganic substance	25	43	21	33	0	0	0	0
	response to X-ray	3	3	3	3	0	0	0	0
	response to lipid	32	54	23	43	0	0	0	0
	response to chemical	106	168	77	137	0	0	0	0
	response to oxygen-containing compound	49	87	38	75	0	0	0	0
cell response to stress	cellular response to abiotic stimulus	11	14	10	15	0	0	0	0
	cellular response to acid chemical	20	29	17	29	0	0	0	0
	cellular response to radiation	8	10	8	12	0	0	0	0
	cellular response to ionizing radiation	3	3	3	3	0	0	0	0
	cellular response to gamma radiation	3	3	3	3	0	0	0	0
	cellular response to X-ray	3	3	3	3	0	0	0	0
photosynthesis	photosynthesis, light harvesting	0	0	0	0	47	49	41	45
	photosynthesis, light harvesting in photosystem I	0	0	0	0	31	33	30	32
	regulation of photosynthesis	0	0	0	0	11	10	8	10
	photosynthesis	0	0	0	0	172	180	137	171
	photosynthesis, light reaction	0	0	0	0	87	95	67	87
	photosynthesis, dark reaction	0	0	0	0	6	7	5	6
	regulation of photosynthesis, light reaction	0	0	0	0	9	10	7	9
carbohydrate catabolism	carbohydrate metabolic process	0	0	0	0	304	300	241	285
	carbohydrate catabolic process	0	0	0	0	89	84	63	79
	single-organism carbohydrate catabolic process	0	0	0	0	36	39	23	38

ISSN: 1471-2164