Table 1 List of potential quantitative trait loci, based on the genome-wide detection of polymorphisms at nucleotide resolution with DNA microarrays and WGS
Chromosome | Gene/s | SNPscanner prediction signal | % of AWRI1631-derived SNVs in the high NL content subpopulation | # of non-silent SNVs in ORF | # of SNVs in the 5′-upstream region (500 bp) |
|---|---|---|---|---|---|
XII | PIG1 | 3.91 | 86–95 | 14 | 0 |
XIV | PHO23 | 2.21 | 87–91 | 1 | 7 |
XIV | AQR1 | 1.57 | 82–90 | 3 | 4 |
XIII | PML39 | 1.18 | 77–81 | 2 | 3 |
I | SWH1/YAT1a | 0.97 | 46–73 | 6 | 3 |
V | RML2 | 0.95 | 18–28 | 1 | 3 |
XV | AFI1 | 0.84 | 66–75 | 5 | 1 |
XIII | ZDS2 | 0.81 | 73–79 | 7 | 3 |