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Fig. 2 | BMC Genomics

Fig. 2

From: Transcriptomics analysis of Toxoplasma gondii-infected mouse macrophages reveals coding and noncoding signatures in the presence and absence of MyD88

Fig. 2

Overview of RNA-sequencing reads mapping to both mouse and Toxoplasma genomes. A total of 20 RNA samples were submitted for sequencing, and characteristics of each sample are provided here. Column 1 denotes the sample name. 88, MyD88 KO BMDM; wt, wild type BMDM; M, noninfected macrophages; RH, macrophages infected with Type I RH strain Toxoplasma; PTG, samples infected with T. gondii Type II PTG strain. The numbers indicate independent biological replicates. InputReads (Column 2) denotes the number of reads obtained for each sample. Dropped % (Column 3) indicates the percent of input reads deemed low-quality and dropped. Mouse % (Column 4) is the percent of high-quality reads that mapped to the mouse genome. Toxo % (Column 5) denotes the percent of high-quality reads that mapped to the T. gondii genome. Shared % (Column 6) indicates the percent of high-quality reads mapping to both mouse and T. gondii genomes

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