Table 1 The BCC of enhancers and that of promoters are likely to be 1 in a cell line
From: An intriguing characteristic of enhancer-promoter interactions
Cell line | IEPs | BCC of enhancers | % of total enhancers with multiple promoters and BCC>0(E1) | % of E1 with BCC≥0.9 | BCC of promoters | % of total promoters with multiple enhancers and BCC>0(P1) | % of P1 with BCC≥0.9 | |||
|---|---|---|---|---|---|---|---|---|---|---|
all | multiple | all | multiple | |||||||
Rao | GM12878 | 294 | 0.97 | 0.96 | 17.47 | 87.5 | 0.97 | 0.95 | 19.35 | 91.67 |
(2384) | (0.99) | (0.96) | 18.44) | 88.95) | (0.95) | (0.93) | (27.15) | (87.98) | ||
HELA | 11 | 1 | NA | NA | NA | 1 | NA | NA | NA | |
(37) | (1) | (1) | (12.5) | (100) | (1) | (1) | 11.76) | (100) | ||
HMEC | 260 | 0.97 | 0.96 | 15.42 | 90.32 | 0.96 | 0.91 | 13.97 | 88 | |
(2558) | (0.99) | (0.98) | (26.9) | (95.91) | (0.97) | (0.96) | (37.41) | (93.82) | ||
HUVEC | 9 | 1 | NA | NA | NA | NA | NA | NA | NA | |
(95) | (1) | (1) | (10.47) | (100) | (1) | (1) | (19.35) | (100) | ||
IMR90 | 144 | 1 | 1 | 4.8 | 100 | 1 | 1 | 6.25 | 100 | |
(554) | (1) | (0.99) | (8.98) | (100) | (0.99) | (0.98) | (9.35) | (93.1) | ||
K562 | 47 | 1 | 1 | 10.81 | 100 | 1 | 1 | 12.82 | 100 | |
(638) | (1) | (1) | (17.35) | (100) | (1) | (1) | (27.92) | (100) | ||
KBM7 | 8 | NA | NA | NA | NA | 1 | NA | NA | NA | |
NHEK | 0 | NA | NA | NA | NA | NA | NA | NA | NA | |
(0) | (NA) | (NA) | (NA) | (NA | (NA | (NA | (NA | (NA | ||
Jin | IMR90 | 1167 | 0.9 | 0.84 | 34.86 | 62.16 | 0.77 | 0.73 | 37.66 | 52.98 |
(5303) | (0.93) | (0.87) | (34.97) | (70.75) | (0.68) | (0.66) | (49.11) | (40.92) | ||
Li | K562 | 2916 | 0.8 | 0.75 | 30.98 | 50.92 | 0.86 | 0.75 | 26.43 | 44.13 |
(33449) | (0.86) | (0.78) | (41.9) | (53.62) | (0.67) | (0.65) | (57.26) | (38.73) | ||
MCF7 | 2190 | 0.89 | 0.83 | 25.15 | 66.76 | 0.86 | 0.75 | 22.59 | 57.41 | |