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Table 1 The BCC of enhancers and that of promoters are likely to be 1 in a cell line

From: An intriguing characteristic of enhancer-promoter interactions

  Cell line IEPs BCC of enhancers % of total enhancers with multiple promoters and BCC>0(E1) % of E1 with BCC≥0.9 BCC of promoters % of total promoters with multiple enhancers and BCC>0(P1) % of P1 with BCC≥0.9
    all multiple    all multiple   
Rao GM12878 294 0.97 0.96 17.47 87.5 0.97 0.95 19.35 91.67
   (2384) (0.99) (0.96) 18.44) 88.95) (0.95) (0.93) (27.15) (87.98)
  HELA 11 1 NA NA NA 1 NA NA NA
   (37) (1) (1) (12.5) (100) (1) (1) 11.76) (100)
  HMEC 260 0.97 0.96 15.42 90.32 0.96 0.91 13.97 88
   (2558) (0.99) (0.98) (26.9) (95.91) (0.97) (0.96) (37.41) (93.82)
  HUVEC 9 1 NA NA NA NA NA NA NA
   (95) (1) (1) (10.47) (100) (1) (1) (19.35) (100)
  IMR90 144 1 1 4.8 100 1 1 6.25 100
   (554) (1) (0.99) (8.98) (100) (0.99) (0.98) (9.35) (93.1)
  K562 47 1 1 10.81 100 1 1 12.82 100
   (638) (1) (1) (17.35) (100) (1) (1) (27.92) (100)
  KBM7 8 NA NA NA NA 1 NA NA NA
  NHEK 0 NA NA NA NA NA NA NA NA
   (0) (NA) (NA) (NA) (NA (NA (NA (NA (NA
Jin IMR90 1167 0.9 0.84 34.86 62.16 0.77 0.73 37.66 52.98
   (5303) (0.93) (0.87) (34.97) (70.75) (0.68) (0.66) (49.11) (40.92)
Li K562 2916 0.8 0.75 30.98 50.92 0.86 0.75 26.43 44.13
   (33449) (0.86) (0.78) (41.9) (53.62) (0.67) (0.65) (57.26) (38.73)
  MCF7 2190 0.89 0.83 25.15 66.76 0.86 0.75 22.59 57.41
  1. In the head row, “multiple” means the enhancers (or promoters) with multiple interacting promoters (enhancers). “All” means all enhancers (or promoters). When two numbers are in an entry, the number in the parenthesis is from the ChromHMM enhancers. BCC value is labeled “NA”, when the number of corresponding enhancers (or promoters) is zero
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