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Table 1 Summary statistics of transcriptome mappings of all datasets used in the study

From: Multi-species transcriptome meta-analysis of the response to retinoic acid in vertebrates and comparative analysis of the effects of retinol and retinoic acid on gene expression in LMH cells

Dataset Instrument Read length Avg. no. of reads SD no. of reads Aligned reads (%) Multiple alingments (%) Exon coverage BioProject Reference
LMH cells Illumina NovaSeq 2 × 50 bp 56,194,679 7,049,990 92.2 2.4 51.3x PRJNA667585 This study
SH-SY5Y cells Illumina Genome Analyzer IIx 1 × 35 bp 20,527,389 6,226,040 99.1 32.8 4x PRJEB6636 [9]
mESCs Illumina HiSeq 2000 1 × 50 bp 31,145,345 12,850,360 97.4 18.1 9.1x PRJNA274740 [10]
mLympho Illumina HiSeq 2500 2 × 100 bp 45,280,435 16,575,120 92.2 8.1 52.7x PRJNA282594 [11]
Xenopus Illumina HiSeq 2000 1 × 50 bp 23,289,030 1,851,281 94.5 6.5 11.5x PRJNA448780 [12]