Table 1 Summary statistics of transcriptome mappings of all datasets used in the study
Dataset | Instrument | Read length | Avg. no. of reads | SD no. of reads | Aligned reads (%) | Multiple alingments (%) | Exon coverage | BioProject | Reference |
|---|---|---|---|---|---|---|---|---|---|
LMH cells | Illumina NovaSeq | 2 × 50 bp | 56,194,679 | 7,049,990 | 92.2 | 2.4 | 51.3x | PRJNA667585 | This study |
SH-SY5Y cells | Illumina Genome Analyzer IIx | 1 × 35 bp | 20,527,389 | 6,226,040 | 99.1 | 32.8 | 4x | PRJEB6636 | [9] |
mESCs | Illumina HiSeq 2000 | 1 × 50 bp | 31,145,345 | 12,850,360 | 97.4 | 18.1 | 9.1x | PRJNA274740 | [10] |
mLympho | Illumina HiSeq 2500 | 2 × 100 bp | 45,280,435 | 16,575,120 | 92.2 | 8.1 | 52.7x | PRJNA282594 | [11] |
Xenopus | Illumina HiSeq 2000 | 1 × 50 bp | 23,289,030 | 1,851,281 | 94.5 | 6.5 | 11.5x | PRJNA448780 | [12] |