A QTL for conformation of back and croup influences lateral gait quality in Icelandic horses

BMC Genomics

Table 1 Results from haplotype analysis for the score of back and croup

Haplotypes (SNPs numbers^a)										Coef	Freq	p-value	Sim. p-value
1	2	3	4	5	6	7	8^a	9	10	Coef	Freq	p-value	Sim. p-value
G	T	C	A	T	A	T	A	A	T	−0.300	0.383	< 0.001	< 0.001
G	T	C	A	T	A	T	A	G	C	0.090	0.021	0.657	0.718
G	T	C	A	G	G	G	A	A	T	0.119	0.027	0.518	0.889
G	C	T	C	T	A	G	A	A	T	0.090	0.025	0.626	0.963
A	C	T	C	G	G	G	G	G	C	0.300	0.474	< 0.001	< 0.001

Sim. p-value = p-value adjusted by using 100,000 permutations
Significant results in bold
Coef. coefficient, estimated effect of the haplotype on the score of back and croup from the glm model in the haplotype analysis
Freq. frequencies
^aSNP numbers in bp position order with top SNP as number 8 with reference allele A and alternate allele G

ISSN: 1471-2164