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Table 1 Results from haplotype analysis for the score of back and croup

From: A QTL for conformation of back and croup influences lateral gait quality in Icelandic horses

Haplotypes (SNPs numbersa) Coef Freq p-value Sim.
p-value
1 2 3 4 5 6 7 8a 9 10
G T C A T A T A A T −0.300 0.383 < 0.001 < 0.001
G T C A T A T A G C 0.090 0.021 0.657 0.718
G T C A G G G A A T 0.119 0.027 0.518 0.889
G C T C T A G A A T 0.090 0.025 0.626 0.963
A C T C G G G G G C 0.300 0.474 < 0.001 < 0.001
  1. Sim. p-value = p-value adjusted by using 100,000 permutations
  2. Significant results in bold
  3. Coef. coefficient, estimated effect of the haplotype on the score of back and croup from the glm model in the haplotype analysis
  4. Freq. frequencies
  5. aSNP numbers in bp position order with top SNP as number 8 with reference allele A and alternate allele G