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Table 2 Gene ontology (GO) terms indicating over-represented, up-regulated genes in hormone homeostasis at 12-h post-induction

From: Early transcriptome changes induced by the Geminivirus C4 oncoprotein: setting the stage for oncogenesis

GO terms P-value* FDR** Fold enrichment Genea symbol Gene name (Gene ID)
Hormone biosynthesis
(GO:0042446)
8.25E-06 6.10E-03 13.02 ACS4 1-aminocyclopropane-1-carboxylate synthase 4 (AT2G22810)
ACS5 1-aminocyclopropane-1-carboxylate synthase 5 (AT5G65800)
ACS9 1-aminocyclopropane-1-carboxylate synthase 9 (AT3G49700)
GA2OX8 Gibberellin 2-oxidase (AT4G21200)
LOG5 Lysine decarboxylase protein 5 (AT4G35190)
MYB62 R2R3-MYB transcription family 62 (AT1G68320)
Regulation of hormone levels
(GO:0010817)
1.12E-05 7.37E-03 7.64 ACS4 1-aminocyclopropane-1-carboxylate synthase 4 (AT2G22810)
ACS5 1-aminocyclopropane-1-carboxylate synthase 5 (AT5G65800)
ACS9 1-aminocyclopropane-1-carboxylate synthase 9 (AT3G49700)
GA2OX8 Gibberellin 2-oxidase (AT4G21200)
LOG5 Lysine decarboxylase protein 5 (AT4G35190)
MYB62 R2R3-MYB transcription family 62 (AT1G68320)
RGF6 Root meristem growth factor 6 (AT4G16515)
RGF9 Root meristem growth factor 9 (AT5G64770)
Response to auxin
(GO:0009733)
6.97E-05 2.06E-02 7.01 ACS4 1-aminocyclopropane-1-carboxylate synthase 4 (AT2G22810)
IAA5 Indole − 3-acetic acid inducible 5 (AT1G15580)
SAUR9 Small auxin upregulated RNA 9 (AT4G36110)
SAUR10 Small auxin upregulated RNA 10 (AT2G18010)
SAUR15 Small auxin upregulated RNA 15 (AT4G38850)
SAUR27 Small auxin upregulated RNA 27 (AT3G03840)
XTH19 Xyloglucan endotransglucosylase/hydrolase protein 19 (AT4G30290)
Response to brassinosteroid
(GO:0009741)
1.51E-04 3.89E-02 15.54 ARL ARGOS-like protein (AT2G44080)
BSK6 Brassinosteroid-signaling kinase 6 (AT3G54030)
PME41 Pectin methylesterase 41 (AT4G02330)
SAUR10 Small auxin upregulated RNA 10 (AT2G18010)
Response to salicylic acid
(GO:0009751)
1.87E-04 4.25E-02 9.71 ABCG40 ABC transporter G family member 40 (AT1G15520)
MYB62 R2R3-MYB transcription family 62 (AT1G68320)
PXMT1 Paraxanthine methyltransferase 1 (AT1G66700)
OPR1 12-oxophytodienoate reductase 1 (AT1G76680)
WRKY30 WRKY transcription factor 30 (AT5G24110)
Response to hormone
(GO:0009725)
9.26E-08 1.37E-04 4.37 ACS4 1-aminocyclopropane-1-carboxylate synthase 4 (AT2G22810)
ACS5 1-aminocyclopropane-1-carboxylate synthase 5 (AT5G65800)
ABCG40 ABC transporter G family member 40 (AT1G15520)
ARL ARGOS-like protein (AT2G44080)
BSK6 Brassinosteroid-signaling kinase 6 (AT3G54030)
CRRSP38 Cysteine-rich repeat secretory protein 38 (AT3G22060)
ERF003 Ethylene-responsive transcription factor 003 (AT5G25190)
IAA5 Indole − 3-acetic acid inducible 5 (AT1G15580)
MYB62 R2R3-MYB transcription family 62 (AT1G68320)
OPR1 12-oxophytodienoate reductase 1 (AT1G76680)
PME41 Pectin methylesterase 41 (AT4G02330)
PXMT1 Paraxanthine methyltransferase 1 (AT1G66700)
SAUR9 Small auxin upregulated RNA 9 (AT4G36110)
SAUR10 Small auxin upregulated RNA 10 (AT2G18010)
SAUR15 Small auxin upregulated RNA 15 (AT4G38850)
SAUR27 Small auxin upregulated RNA 27 (AT3G03840)
WRKY30 WRKY transcription factor 30 (AT5G24110)
XTH19 Xyloglucan endotransglucosylase/hydrolase protein 19 (AT4G30290)
  1. *P-values < 0.05
  2. **FDR, false discovery rate, with P < 0.05
  3. aGene symbols in bold print indicate genes uniquely responsive to C4
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