Early transcriptome changes induced by the Geminivirus C4 oncoprotein: setting the stage for oncogenesis

BMC Genomics

Table 3 Disease Resistance: Gene ontology enrichment analysis of over-represented, up-regulated genes at 12 h post-induction

GO terms	P-value	FDR^*	Fold enrichment	Gene symbol^a	Encoded protein name (Gene ID)
Response to other organisms (GO:0051707)	2.25E-04	4.75E-02	3.93	–	Disease resistance family protein/LRR family protein (AT2G34930) ^***
				*CYP71A13*	Indoleacetaldoxime dehydratase (Cytochrome P450) (AT2G30770) ^***
				–	Endochitinase (AT2G43580) ^***
				RLP23	Receptor-like protein 23 (AT2G32680) ^***
				PME41	Pectin methylesterase 41 (AT4G02330)^***
				*PXMT1*	Paraxanthine methyltransferase 1 (AT1G66700) ^***
				BG3	Glucan endo-1-3-beta-glucosidase BG3 (AT3G57240)
				CRK7	Cysteine-rich receptor-like protein kinase 7 (AT4G23150)
				CRK14	Cysteine-rich receptor-like protein kinase 14 (AT4G23220)
				*ABCG40*	ABC transporter G family 40 (AT1G15520)

^*FDR false discovery rate, value has a P < 0.05
^***Significantly enriched in the GO category response to fungi (GO:0009620, P-value = 1.63E-04, FDR = 3.86E-02, Fold enrichment = 7.52)
^aGene symbols in bold print indicate genes uniquely responsive to C4

ISSN: 1471-2164