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Table 5 Gene ontology enrichment analysis of down-regulated genes at 6- and 12-h post induction

From: Early transcriptome changes induced by the Geminivirus C4 oncoprotein: setting the stage for oncogenesis

GO terms P-value* FDR** Fold enrichment Gene symbola Encoded protein name (Gene ID)
Down-regulated genes at 6 and 12 h post-induction
 Lipid transport
(GO:0006869, biological process)
2.80E-06 1.65E-02 92.45 AZI5 Lipid transfer protein (AT4G12510)
MQD22.2 Lipid transfer protein (AT5G46890)
EXTA Lipid transfer protein (AT5G46900)
 Lipid binding
(GO:0008289, molecular function)
1.61E-05 4.95E-02 51.23 AZI5 Lipid transfer protein (AT4G12510)
MQD22.2 Lipid transfer protein (AT5G46890)
EXTA Lipid transfer protein (AT5G46900)
Down-regulated genes at 12 h post-induction
 Trichoblast differentiation
(GO:0010054, biological process)
2.04E-06 1.21E-02 44.77 COBL9 Cobra-like protein 9 (AT5G49270)
LRX1 Leucine-rich repeat extension-like protein 1 (AT1G12040)
GT16 Xyloglucan-specific galacturonosyltransferase 1 (AT1G63450)
MRH6 Adenine nucleotide alpha hydrolases -like protein (AT2G03720)
 Cell development
(GO:0048468, biological process)
3.66E-06 7.21E-03 20.83 COBL9 Cobra-like protein 9 (AT5G49270)
LRX1 Leucine-rich repeat extensin-like protein 1 (AT1G12040)
NAS1 Nicotianamine synthase 1 (AT5G04950)
GT16 Xyloglucan-specific galacturonosyltransferase 1 (AT1G63450)
MRH6 Adenine nucleotide alpha hydrolases-like protein (AT2G03720)
 Plant-type cell wall
(GO:0009505: cellular component)
3.99E-07 4.33E-04 20.17 LRX1 Leucine-rich repeat extension-like protein 1 (AT1G12040)
PER1 Peroxidase 1 (AT1G05240)
PER2 Peroxidase 2 (AT1G05250)
PER24 Peroxidase 24 (AT2G39040)
PME24 Pectinesterase/pectinesterase inhibitor 24 (AT3G10710)
PME46 Pectinesterase/pectinesterase inhibitor 46 (AT5G04960)
  1. *P-values < 0.05
  2. **All FDR values have a P < 0.05. FDR, false discovery rate
  3. aGene symbols in bold print indicate genes uniquely responsive to C4