Fig. 2
Gene expression dynamics of R. solanacearum throughout infection. Six clusters were obtained through Mfuzz clustering of log2-fold-change data of the apoplast, early and late xylem conditions normalised to the reference rich liquid media. Clusters include the genes with a membership higher than 70% and consistently associated to the same cluster on at least 30 out of 40 iterations. Number of genes indicated above each graph. The list of genes associated to each cluster was extracted and surveyed for enriched KEGG pathways. Dot plots of the enriched KEGG pathways in each cluster are shown next to the cluster