Transcriptomic, proteomic, and physiological comparative analyses of flooding mitigation of the damage induced by low-temperature stress in direct seeded early indica rice at the seedling stage

Table 2 Enriched KEGG Pathways associated with DEGs and DEPs

Pathway name	Pathway ID	Number of molecules		P value
Pathway name	Pathway ID	Mapping	All	P value
KEGG Pathways between LT and CK
Monobactam biosynthesis	osa00261	2	13	5.44E-04
Glycine, serine and threonine metabolism	osa00260	4	26	4.69E-04
Biosynthesis of secondary metabolites	osa01110	10	13	1.16E-04
Pentose phosphate pathway	osa00030	2	13	8.82E-03
Biosynthesis of amino acids	osa01230	5	26	8.08E-03
Metabolic pathways	osa01100	11	13	2.71E-03
Arachidonic acid metabolism	osa00590	2	26	1.96E-03
Glycolysis / Gluconeogenesis	osa00010	2	13	4.85E-02
Proteasome	osa03050	2	26	4.00E-02
Phenylalanine, tyrosine and tryptophan biosynthesis	osa00400	2	26	2.51E-02
Fructose and mannose metabolism	osa00051	2	13	1.44E-02
KEGG Pathways between LTF and CK
Thiamine metabolism	osa00730	2	14	9.73E-04
Ribosome biogenesis in eukaryotes	osa03008	3	20	5.79E-03
Carotenoid biosynthesis	osa00906	2	14	4.45E-03
Biosynthesis of secondary metabolites	osa01110	9	14	2.01E-03
Metabolic pathways	osa01100	12	14	1.35E-03
Glycine, serine and threonine metabolism	osa00260	2	20	3.28E-02
Glycolysis / Gluconeogenesis	osa00010	3	20	1.67E-02
KEGG Pathways between LTF and LT
Photosynthesis - antenna proteins	osa00196	2	9	2.53E-04
Photosynthesis	osa00195	3	9	2.12E-04

The pathway ranking in this table is in order from high to low between LT, LTF and CK. The “mapping” number represents the number of annotated DEGs and DEPs in the pathway, while the “all” number represents the total number of proteins in the pathway
LT low temperature, LTF low temperature flooding, CK control

ISSN: 1471-2164