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Table 3 The average elapsed time to predict sub-subfamily labels of 10,000 simulated PacBio reads for each method

From: Improving protein domain classification for third-generation sequencing reads using deep learning

Setup

ProDOMA

DeepFam

HMMER

HMMER −max

CPU

1168.78s

276.74s

312.13s

3470.04s

GPU

25.71s

20.37s

unavailable

unavailable