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Table 3 The average elapsed time to predict sub-subfamily labels of 10,000 simulated PacBio reads for each method

From: Improving protein domain classification for third-generation sequencing reads using deep learning

Setup ProDOMA DeepFam HMMER HMMER −max
CPU 1168.78s 276.74s 312.13s 3470.04s
GPU 25.71s 20.37s unavailable unavailable