Table 2 The GO and KEGG enrichment for up- and down- regulated DEGs at the late stage (12 h) with FC ≥ 1.5

  ko04712

Circadian rhythm - plant

8.46E-14

5.92E-12

  ko00350

Tyrosine metabolism

4.24E-06

2.97E-04

  ko00592

alpha-Linolenic acid metabolism

9.60E-06

6.72E-04

  ko00591

Linoleic acid metabolism

1.18E-04

8.26E-03

  GO:0016168

chlorophyll binding

6.69E-04

3.02E-06

  GO:0004022

alcohol dehydrogenase (NAD) activity

7.83E-04

3.54E-06

GO:0019887

protein kinase regulator activity

4.75E-03

2.15E-05

  ko00196

Photosynthesis - antenna proteins

4.94E-32

5.23E-30

  ko00195

Photosynthesis

1.25E-13

1.33E-11

  ko00710

Carbon fixation in photosynthetic organisms

6.04E-07

6.40E-05

  ko01200

Carbon metabolism

1.36E-05

1.44E-03

  ko00860

Porphyrin and chlorophyll metabolism

7.30E-05

7.74E-03

  GO:0016168

chlorophyll binding

2.72E-31

1.35E-28

  GO:0031409

pigment binding

3.98E-18

1.97E-15

  GO:0010277

chlorophyllide a oxygenase [overall] activity

4.74E-11

2.35E-08

  GO:0030267

glyoxylate reductase (NADP) activity

2.50E-07

1.24E-04

  GO:0016618

hydroxypyruvate reductase activity

2.50E-07

1.24E-04

  GO:0016620

oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

4.69E-07

2.32E-04

  GO:0009881

photoreceptor activity

5.83E-07

2.89E-04

  GO:0051537

2 iron, 2 sulfur cluster binding

2.64E-06

1.31E-03

  GO:0000155

phosphorelay sensor kinase activity

1.08E-05

5.35E-03

  GO:0004512

inositol-3-phosphate synthase activity

1.13E-05

5.58E-03

  GO:0015112

nitrate transmembrane transporter activity

1.35E-05

6.68E-03

  GO:0008878

glucose-1-phosphate adenylyltransferase activity

1.35E-05

6.68E-03

  GO:0009522

photosystem I

7.29E-32

9.69E-30

  GO:0010287

plastoglobule

4.63E-27

6.15E-25

  GO:0009535

chloroplast thylakoid membrane

2.10E-13

2.79E-11

  GO:0009507

chloroplast

5.18E-08

6.90E-06

  GO:0009654

photosystem II oxygen evolving complex

5.61E-08

7.46E-06

  GO:0009538

photosystem I reaction center

7.27E-06

9.67E-04

  GO:0018298

protein-chromophore linkage

6.27E-33

3.85E-30

  GO:0009768

photosynthesis, light harvesting in photosystem I

9.65E-23

5.93E-20

  GO:0009416

response to light stimulus

9.88E-14

6.07E-11

  GO:0009765

photosynthesis, light harvesting

2.15E-11

1.32E-08

  GO:0015979

photosynthesis

1.62E-09

9.94E-07

  GO:0042549

photosystem II stabilization

3.37E-08

2.07E-05

  GO:0019252

starch biosynthetic process

2.55E-06

1.56E-03

  GO:0032957

inositol trisphosphate metabolic process

5.79E-06

3.56E-03

  GO:0009585

red, far-red light phototransduction

7.88E-06

4.84E-03

  GO:0006021

inositol biosynthetic process

1.05E-05

6.42E-03

  GO:0010143

cutin biosynthetic process

1.21E-05

7.45E-03

  GO:0000160

phosphorelay signal transduction system

1.49E-05

9.17E-03