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Fig. 4 | BMC Genomics

Fig. 4

From: Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

Fig. 4

Whole genome phylogenetic analysis informed by recombination. Phylogenetic tree of a whole genome sequence MAFFT alignment of the C. abortus (Cab) and C. psittaci (Cps) strains shown in Table 2 as derived by Gubbins after removing genomic regions affected by recombination. Genotypes are given in square brackets. FastTree was used as tree builder, and a maximum of 100 iterations was specified in order to guarantee convergence. The tree was midpoint rooted and prepared for publication in Dendroscope. Strain 84/2334 is in bold and red font. Classical and avian C. abortus strains are in blue and green fonts, respectively

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BMC Genomics

ISSN: 1471-2164

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