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Table 2 General genome features of strain 84/2334, compared with representative C. psittaci and C. abortus strains

From: Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

Species

Strain

Genotype

Host

Chromosome

Length (bp)

CDS a

%GC b

rRNA c

tRNA d

Plasmid e

(length in bp)

Genbank Accession No

Chromosome

Plasmid

C. psittaci

6BC

A

Parrot

1,171,667

987

39.1

1

38

Y (7,553)

CP002586.1

CP002587.1

C. psittaci

84/55

A

Amazon Parrot

1,172,064

1004

39.1

1

38

Y (7,487)

CP003790.1

CP003812.1

C. psittaci

CP3

B

Urban Pigeon

1,168,150

1002

39.1

1

38

Y (7,552)

CP003797.1

CP003813.1

C. psittaci

GR9

C

Mallard

1,147,152

1022

39.1

1

38

N

CP003791.1

None

C. psittaci

NJ1

D

Turkey

1,161,434

994

39.0

1

38

Y (7,552)

CP003798.1

CP003816.1

C. psittaci

MN

E

Human

1,168,490

993

39.1

1

38

Y (7,491)

CP003792.1

CP003815.1

C. psittaci

VS225

F

Parakeet

1,157,385

990

39.0

1

38

Y (7,553)

CP003793.1

CP003817.1

C. psittaci

WS/RT/E30

E/B

Mallard

1,140,789

980

39.0

1

38

Y (7,553)

CP003794.1

CP003819.1

C. psittaci

M56

M56

Muskrat

1,161,385

992

38.8

1

38

Y (7,553)

CP003795.1

CP003814.1

C. psittaci

WC

WC

Cattle

1,172,265

998

39.1

1

38

Y (7,553)

CP003796.1

CP003818.1

C. abortus

15-70d/24

G1

Eurasian Teal

1,141,702

993

39.8

1

38

Y (7,680)

LS450958.1

LS450959.1

C. abortus

15-49d/3

G2

Mallard

1,132,456

977

39.6

1

38

Y (7,683)

LS450956.1

LS450957.1

C. psittaci

84/2334

F

Amazon Parrot

1,165,692

994

39.9

1

38

Y (7,553)

CP031646.1

CP031647.1

C. abortus

S26/3 f

wt

Sheep

1,144,377

970

39.9

1

38

N

CR848038.1

None

C. abortus

AB7 g

wt

Sheep

1,144,467

971

39.9

1

38

N

LN554882.1

None

C. abortus

LLG h

variant

Goat

1,143,694 i

967

39.9

1

38

N

CP018296.1

None

  1. atotal number of predicted coding sequences; b percentage GC content of genomic sequence; c number of rRNA operons; d number of tRNA genes; e presence of extrachromosomal plasmid is indicted by Y (yes) or N (no) and if present length is given in brackets; f representative wild-type (wt) strain of UK origin [27]; g representative wt strain of French origin [37]; h one of two (identical) known variant strains of C. abortus [27, 38]; i genome incomplete (approx.. 4721 bp + 3457 bp missing in Pmp loci 2 and 3 (See Fig. 2), respectively). Sequence information for C. psittaci strain 84/2334 is highlighted in bold