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Fig. 8 | BMC Genomics

Fig. 8

From: Global analysis of expression, maturation and subcellular localization of mouse liver transcriptome identifies novel sex-biased and TCPOBOP-responsive long non-coding RNAs

Fig. 8

Divergently transcribed lncRNA-PCG genes of interest. Shown are UCSC genome browser screen shots, as described in Fig. 7, highlighting five divergent lncRNA-PCG gene pairs, whose direction of transcription is marked by red arrows. See data in Table S4A, column AJ, and Table S5A, column AX. a Divergent sex-biased and TCPOBOP-responsive gene pair, lnc9183 and Socs2. b Divergent TCPOBOP-responsive gene pair, lnc7169 and Gdf15. These genes fall within a sex-independent intra-TAD loop (black) with several sex-independent DHS (gray). c Divergent TCPOBOP-responsive gene pair, lnc8105 and Onecut1 (Hnf6), both of whose TSS are in the same male-biased intra-TAD loop (last track, light blue). d Divergent TCPOBOP-responsive gene pair, lnc13509 and Mir802. These genes fall within a sex-independent intra-TAD loop (black) with several female-biased DHS (pink) in the promoter regions of both genes. e Divergent TCPOBOP-responsive gene pair, lnc10942 and Dio3. These genes are excluded from the predicted intra-TAD loop nearby (black) and their promoters are both within a shared female-biased DHS region (pink)

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