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Table 3 QTL genotypes for bloom date (BD), ripening date (RD), and fruit development period (FDP) traits for seven breeding parents, with associated linkage groups, haplotype names, the haplotype’s SNP sequences, and original sources

From: Mapping and characterization QTLs for phenological traits in seven pedigree-connected peach families

Trait/LG/Pos

Parents

QTL allele

Hap.

SNP haplotype

Successive ancestors

Allele sequence

(founders in bold)

BD LG1 [172.23–182.34]

Galaxy

Q ♀

H4

ABABBBBBAAB

Galaxy

Galaxy

Q ♂

H4

ABABBBBBAAB

Galaxy

Y426–371

Q1 ♀

H1

ABABBBAAAAB

Y426–371

Y426–371

Q1 ♂

H7

BABBBBAAABB

Y426–371

Y434–40

Q4 ♂

H2

ABABBBAAABB

Y434–40

Victor

Q ♂

H5

ABBBBBABBBA

Goldprince > F_Goldprince

Y435–246

Q3 ♀

H6

BAABBBBBAAB

Y435–246

Y435–246

Q2 ♂

H3

ABABBBABBBA

Y435–246

Y434–40

q ♀

H8

BBABBBBBAAA

Y434–40

Victor

q ♀

H8

BBABBBBBAAA

TropicBeauty > Fla3–2

TX2B136

q ♀

H8

BBABBBBBAAA

TX2B136

TX2B136

q ♂

H8

BBABBBBBAAA

TX2B136

TXW1490_1

q ♀

H8

BBABBBBBAAA

TropicBeauty > Fla3–2

TXW1490_1

q ♂

H8

BBABBBBBAAA

F_TXW1490_1

BD LG4 [47.83–54.54]

TX2B136

Q ♀

H3

ABAAAABBAABAB

TX2B136

TX2B136

Q ♂

H3

ABAAAABBAABAB

TX2B136

TXW1490_1

Q ♀

H3

ABAAAABBAABAB

TropicBeauty > Flordaprince

TXW1490_1

Q ♂

H3

ABAAAABBAABAB

F_TXW1490_1

Y426–371

Q ♀

H3

ABAAAABBAABAB

Y426–371

Victor

Q ♂

H3

ABAAAABBAABAB

Goldprince > F_Goldprince

Y435–246

Q ♂

H2

BABBBBAABBABA

Y435–246

Galaxy

Q ♂

H2

BABBBBAABBABA

Galaxy

Y435–246

q ♀

H1

BBBBBBBABAAAA

Y435–246

Y426–371

q ♂

H1

BBBBBBBABAAAA

Y426–371

Galaxy

q ♀

H1

BBBBBBBABAAAA

Galaxy

Y434–40

q ♂

H1

BBBBBBBABAAAA

Y434–40

Y434–40

q ♀

H4

ABBBBBBABAAAA

Y434–40

Victor

q ♀

H5

ABBABABABBBAB

TropicBeauty > Fla3–2

BD LG7 [62.05–68.91]

Y435–246

Q ♂

H3

ABAAABAABBABB

Y435–246

Galaxy

Q ♀

H6

BBABABBABABBA

Galaxy

Victor

Q ♂

H6

BBABABBABABBA

Goldprince > F_Goldprince

TX2B136

Q ♀

H1

BBABBAAAABAAB

TX2B136

Y426–371

Q ♂

H2

BBABBAAAABABA

Y426–371

Y435–246

Q ♀

H2

BBABBAAAABABA

Y435–246

Y434–40

Q ♀

H2

BBABBAAAABABA

Y434–40

Galaxy

q ♂

H4

AABABBBBBABAB

Galaxy

Y426–371

q ♀

H4

AABABBBBBABAB

Y426–371

Y434–40

q ♂

H5

AABAAAAAABABA

Y434–40

Victor

q ♀

H7

AABBBAAAABABA

TropicBeauty > Flordaprince

TX2B136

q ♂

H7

AABBBAAAABABA

TX2B136

TXW1490_1

q ♀

H7

AABBBAAAABABA

TropicBeauty > Flordaprince

TXW1490_1

q ♂

H7

AABBBAAAABABA

F_TXW1490_1

RD and FDP LG4 [42.33–45.19]

Y426–371

Q1 ♂

H3

BAAAAAAAABAAAAB

Y426–371

Y434–40

Q1 ♂

H3

BAAAAAAAABAAAAB

Y434–40

Galaxy

Q1 ♀

H3

BAAAAAAAABAAAAB

Galaxy

Victor

Q2 ♀

H4

AAABABAABAABBBB

TropicBeauty > Fla3–2

TXW1490_1

Q2 ♀

H4

AAABABAABAABBBB

TropicBeauty > Fla3–2

Y435–246

q1 ♀

H1

ABBBBBBBBABBBBA

Y435–246

Y435–246

q1 ♂

H1

ABBBBBBBBABBBBA

Y435–246

Y434–40

q1 ♀

H1

ABBBBBBBBABBBBA

Y434–40

Galaxy

q1 ♂

H1

ABBBBBBBBABBBBA

Galaxy

Victor

q1 ♂

H1

ABBBBBBBBABBBBA

Goldprince > F_Goldprince

TX2B136

q1 ♀

H1

ABBBBBBBBABBBBA

TX2B136

TX2B136

q1 ♂

H1

ABBBBBBBBABBBBA

TX2B136

TXW1490_1

q1 ♂

H1

ABBBBBBBBABBBBA

F_TXW1490_1

Y426–371

q2 ♀

H2

BBBBBBBBBABBBBA

Y426–371

  1. QTL alleles for each parent cultivar are presented with ♀ and ♂ for maternal and paternal parent sources, respectively. Parents that are heterozygous for the QTL are in bold. Allele(s) for predictive SNP marker(s) associated with Q or q-alleles for increasing or decreasing a given trait, respectively, are shown inunderscored bold. Q/q of different effect magnitude are indicated by subscript numbers. The identity of the SNP markers and their physical and genetic location is given in Additional file 1: Table S7