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Table 3 QTL genotypes for bloom date (BD), ripening date (RD), and fruit development period (FDP) traits for seven breeding parents, with associated linkage groups, haplotype names, the haplotype’s SNP sequences, and original sources

From: Mapping and characterization QTLs for phenological traits in seven pedigree-connected peach families

Trait/LG/Pos Parents QTL allele Hap. SNP haplotype Successive ancestors
Allele sequence (founders in bold)
BD LG1 [172.23–182.34] Galaxy Q ♀ H4 ABABBBBBAAB Galaxy
Galaxy Q ♂ H4 ABABBBBBAAB Galaxy
Y426–371 Q1 H1 ABABBBAAAAB Y426–371
Y426–371 Q1 H7 BABBBBAAABB Y426–371
Y434–40 Q4 H2 ABABBBAAABB Y434–40
Victor Q ♂ H5 ABBBBBABBBA Goldprince > F_Goldprince
Y435–246 Q3 H6 BAABBBBBAAB Y435–246
Y435–246 Q2 H3 ABABBBABBBA Y435–246
Y434–40 q ♀ H8 BBABBBBBAAA Y434–40
Victor q ♀ H8 BBABBBBBAAA TropicBeauty > Fla3–2
TX2B136 q ♀ H8 BBABBBBBAAA TX2B136
TX2B136 q ♂ H8 BBABBBBBAAA TX2B136
TXW1490_1 q ♀ H8 BBABBBBBAAA TropicBeauty > Fla3–2
TXW1490_1 q ♂ H8 BBABBBBBAAA F_TXW1490_1
BD LG4 [47.83–54.54] TX2B136 Q ♀ H3 ABAAAABBAABAB TX2B136
TX2B136 Q ♂ H3 ABAAAABBAABAB TX2B136
TXW1490_1 Q ♀ H3 ABAAAABBAABAB TropicBeauty > Flordaprince
TXW1490_1 Q ♂ H3 ABAAAABBAABAB F_TXW1490_1
Y426–371 Q ♀ H3 ABAAAABBAABAB Y426–371
Victor Q ♂ H3 ABAAAABBAABAB Goldprince > F_Goldprince
Y435–246 Q ♂ H2 BABBBBAABBABA Y435–246
Galaxy Q ♂ H2 BABBBBAABBABA Galaxy
Y435–246 q ♀ H1 BBBBBBBABAAAA Y435–246
Y426–371 q ♂ H1 BBBBBBBABAAAA Y426–371
Galaxy q ♀ H1 BBBBBBBABAAAA Galaxy
Y434–40 q ♂ H1 BBBBBBBABAAAA Y434–40
Y434–40 q ♀ H4 ABBBBBBABAAAA Y434–40
Victor q ♀ H5 ABBABABABBBAB TropicBeauty > Fla3–2
BD LG7 [62.05–68.91] Y435–246 Q ♂ H3 ABAAABAABBABB Y435–246
Galaxy Q ♀ H6 BBABABBABABBA Galaxy
Victor Q ♂ H6 BBABABBABABBA Goldprince > F_Goldprince
TX2B136 Q ♀ H1 BBABBAAAABAAB TX2B136
Y426–371 Q ♂ H2 BBABBAAAABABA Y426–371
Y435–246 Q ♀ H2 BBABBAAAABABA Y435–246
Y434–40 Q ♀ H2 BBABBAAAABABA Y434–40
Galaxy q ♂ H4 AABABBBBBABAB Galaxy
Y426–371 q ♀ H4 AABABBBBBABAB Y426–371
Y434–40 q ♂ H5 AABAAAAAABABA Y434–40
Victor q ♀ H7 AABBBAAAABABA TropicBeauty > Flordaprince
TX2B136 q ♂ H7 AABBBAAAABABA TX2B136
TXW1490_1 q ♀ H7 AABBBAAAABABA TropicBeauty > Flordaprince
TXW1490_1 q ♂ H7 AABBBAAAABABA F_TXW1490_1
RD and FDP LG4 [42.33–45.19] Y426–371 Q1 H3 BAAAAAAAABAAAAB Y426–371
Y434–40 Q1 H3 BAAAAAAAABAAAAB Y434–40
Galaxy Q1 H3 BAAAAAAAABAAAAB Galaxy
Victor Q2 H4 AAABABAABAABBBB TropicBeauty > Fla3–2
TXW1490_1 Q2 H4 AAABABAABAABBBB TropicBeauty > Fla3–2
Y435–246 q1 H1 ABBBBBBBBABBBBA Y435–246
Y435–246 q1 H1 ABBBBBBBBABBBBA Y435–246
Y434–40 q1 H1 ABBBBBBBBABBBBA Y434–40
Galaxy q1 H1 ABBBBBBBBABBBBA Galaxy
Victor q1 H1 ABBBBBBBBABBBBA Goldprince > F_Goldprince
TX2B136 q1 H1 ABBBBBBBBABBBBA TX2B136
TX2B136 q1 H1 ABBBBBBBBABBBBA TX2B136
TXW1490_1 q1 H1 ABBBBBBBBABBBBA F_TXW1490_1
Y426–371 q2 H2 BBBBBBBBBABBBBA Y426–371
  1. QTL alleles for each parent cultivar are presented with ♀ and ♂ for maternal and paternal parent sources, respectively. Parents that are heterozygous for the QTL are in bold. Allele(s) for predictive SNP marker(s) associated with Q or q-alleles for increasing or decreasing a given trait, respectively, are shown inunderscored bold. Q/q of different effect magnitude are indicated by subscript numbers. The identity of the SNP markers and their physical and genetic location is given in Additional file 1: Table S7