Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca

Cheng, Yan; He, Xiaoxue; Priyadarshani, S. V. G. N.; Wang, Yu; Ye, Li; Shi, Chao; Ye, Kangzhuo; Zhou, Qiao; Luo, Ziqiang; Deng, Fang; Cao, Ling; Zheng, Ping; Aslam, Mohammad; Qin, Yuan

doi:10.1186/s12864-021-07490-9

BMC Genomics

Table 5 Fragments transferred from chloroplast to mitochondria in S. glauca

From: Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca

	Alignment length	Identity%	Mismatches	Gap opens	mt start	mt end	cp start	cp end	Gene
1	3954	95.726	82	20	295,697	299,575	90,318	86,377
2	3527	98.469	16	10	207,557	211,072	99,899	103,398	trnA-UCG
3	3527	98.441	16	11	468,275	471,789	128,572	132,071
4	3142	97.581	18	15	292,489	295,603	93,422	90,312	trnI-GAU
5	2545	96.149	35	19	465,776	468,283	126,021	128,539	trnN-GUU, trnR-ACG
6	2546	95.915	39	24	211,064	213,571	103,431	105,949
7	2031	99.015	8	2	199,446	201,472	133,093	135,115	trnV-GAC
8	1063	93.509	20	12	201,516	202,548	96,852	95,809
9	533	94.934	21	4	310,145	310,671	47,809	48,341	trnF-GAA
10	427	97.424	11	0	246,135	246,561	33,914	33,488
11	427	97.424	11	0	70,659	71,085	33,914	33,488
12	388	96.392	14	0	370,829	371,216	19,553	19,940
13	351	95.442	16	0	438,325	438,675	118,358	118,008	ndhA^a
14	279	95.341	13	0	307,665	307,943	71,873	71,595	psbB^a
15	248	93.952	15	0	14,593	14,840	10,031	9784	atpA^a
16	888	73.649	181	39	407,200	408,058	97,374	98,237	rrn16^a
17	157	98.726	2	0	404,203	404,359	42,089	41,933
18	289	85.121	16	10	309,891	310,153	46,981	47,268
19	340	79.706	48	15	145,392	145,717	64,797	64,465	trnW-CCA^b
20	111	96.396	4	0	349,247	349,357	97,265	97,155
21	86	96.512	3	0	138,006	138,091	105,510	105,425	trnN-GUU
22	78	97.436	2	0	117,112	117,189	79	2	trnH-GUG
23	77	96.104	2	1	309,789	309,865	46,566	46,641
24	76	93.421	5	0	114,384	114,459	51,243	51,168	trnM-CAU
25	79	92.405	6	0	353,124	353,202	141,760	141,838
26	56	98.214	1	0	248,777	248,832	37,491	37,436	psaB^a
27	56	98.214	1	0	73,301	73,356	37,491	37,436
28	45	97.778	1	0	274,465	274,509	16,239	16,195	rpoC2^a
29	42	97.619	1	0	239,555	239,596	101,136	101,095	rrn23^a
30	42	97.619	1	0	64,079	64,120	130,834	130,875
31	42	97.619	1	0	239,555	239,596	130,834	130,875
32	61	88.525	4	3	353,019	353,077	96,110	96,169
Total	27,513

Notes: Lowercase a indicates the partial sequence found in mt genome. Lowercase b indicates the mt-derived genes

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ISSN: 1471-2164

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