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Table 1 Genome assembly and annotation statistics for Basenji assemblies vs CanFam3.1 and CanFam_GSD

From: Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

  CanFam_Bas (China) Wags CanFam3.1 CanFam_GSD
Total sequence length 2,345,002,994 2,410,429,933 2,410,976,875 2,407,308,279
Total ungapped length 2,344,926,563 2,410,291,233 2,392,715,236 2,401,163,822
Number of scaffolds 632 2243 3310 430
Scaffold N50 64,291,023 61,087,166 45,876,610 64,346,267
Scaffold L50 14 16 20 15
Number of contigs 780 3630 27,106 736
Contig N50 37,759,230 3,131,423 267,478 20,914,347
Contig L50 23 217 2436 37
No. chromosomes 40 40 40 40
Percentage genome in main chromosomes 99.3% 94.8% 98.3% 96.5%
BUSCO complete (genome) 92.9% (1.14% Duplicated) 91.5% (1.31% Duplicated) 92.2% (1.17% Duplicated) 93.0% (1.38% Duplicated)
BUSCO fragmented (genome) 3.74% 4.53% 4.03% 3.73%
BUSCO missing (genome) 3.34% 3.98% 3.73% 3.37%
BUSCO complete (proteome) 98.5% (1.9% Duplicated) 97.8% (2.4% Duplicated) 95.1% (1.0% Duplicated) 98.9% (2.4% Duplicated)
BUSCO fragmented (proteome) 1.2% 1.5% 1.9% 1.0%
BUSCO missing (proteome) 0.3% 0.7% 3.0% 0.1%
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