Table 1 Genome assembly and annotation statistics for Basenji assemblies vs CanFam3.1 and CanFam_GSD

Total sequence length

2,345,002,994

2,410,429,933

2,410,976,875

2,407,308,279

Total ungapped length

2,344,926,563

2,410,291,233

2,392,715,236

2,401,163,822

Number of scaffolds

632

2243

3310

430

Scaffold N50

64,291,023

61,087,166

45,876,610

64,346,267

Scaffold L50

14

16

20

15

Number of contigs

780

3630

27,106

736

Contig N50

37,759,230

3,131,423

267,478

20,914,347

Contig L50

23

217

2436

37

No. chromosomes

40

40

40

40

Percentage genome in main chromosomes

99.3%

94.8%

98.3%

96.5%

BUSCO complete (genome)

92.9% (1.14% Duplicated)

91.5% (1.31% Duplicated)

92.2% (1.17% Duplicated)

93.0% (1.38% Duplicated)

BUSCO fragmented (genome)

3.74%

4.53%

4.03%

3.73%

BUSCO missing (genome)

3.34%

3.98%

3.73%

3.37%

BUSCO complete (proteome)

98.5% (1.9% Duplicated)

97.8% (2.4% Duplicated)

95.1% (1.0% Duplicated)

98.9% (2.4% Duplicated)

BUSCO fragmented (proteome)

1.2%

1.5%

1.9%

1.0%

BUSCO missing (proteome)

0.3%

0.7%

3.0%

0.1%