Table 2 Predicted copy numbers for CanFam_Bas GeMoMa genes based on A. assembly mapping, and B. long read mapping
A. Dog | Missing | Partial (< 50%) | Single (1n) |  | Duplicate (2n) | 3n+ |
CanFam_Bas | 0 (0) | 0 (0) | 27,129 (25788) | Â | 0 (0) | 0 (0) |
CanFam_Wags | 302 (108) | 120 (58) | 26,103 (25035) | Â | 486 (472) | 118 (115) |
CanFam3.1 | 211 (187) | 167 (161) | 26,404 (25125) | Â | 251 (223) | 96 (92) |
CanFam_GSD | 95 (80) | 48 (42) | 26,586 (25304) | Â | 299 (266) | 101 (96) |
B. Data | 0n | 0.5n | 1n | 1.5n | 2n | 2.5n+ |
CanFam_Bas (ONT) | 2 (2) | 1257 (1201) | 24,116 (22954) | 1508 (1403) | 80 (68) | 166 (160) |
CanFam_Wags (PacBio) | 7 (2) | 4717 (3476) | 21,140 (21049) | 1028 (1024) | 79 (79) | 158 (158) |
CanFam_GSD (ONT) | 21 (18) | 1893 (1795) | 22,412 (21350) | 2503 (2349) | 109 (98) | 191 (178) |