Skip to main content

Table 2 Predicted copy numbers for CanFam_Bas GeMoMa genes based on A. assembly mapping, and B. long read mapping

From: Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

A. Dog Missing Partial (< 50%) Single (1n)   Duplicate (2n) 3n+
CanFam_Bas 0 (0) 0 (0) 27,129 (25788)   0 (0) 0 (0)
CanFam_Wags 302 (108) 120 (58) 26,103 (25035)   486 (472) 118 (115)
CanFam3.1 211 (187) 167 (161) 26,404 (25125)   251 (223) 96 (92)
CanFam_GSD 95 (80) 48 (42) 26,586 (25304)   299 (266) 101 (96)
B. Data 0n 0.5n 1n 1.5n 2n 2.5n+
CanFam_Bas (ONT) 2 (2) 1257 (1201) 24,116 (22954) 1508 (1403) 80 (68) 166 (160)
CanFam_Wags (PacBio) 7 (2) 4717 (3476) 21,140 (21049) 1028 (1024) 79 (79) 158 (158)
CanFam_GSD (ONT) 21 (18) 1893 (1795) 22,412 (21350) 2503 (2349) 109 (98) 191 (178)
  1. Figures in brackets exclude predicted genes on X chromosome