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Table 1 Ka, Ks and Ka/Ks analyses of GhARF genes compared with their corresponding progenitor homoeologs

From: Characterization of cotton ARF factors and the role of GhARF2b in fiber development

Locus Name Gene Name Chrom Locus Name Gene Name Chrom Ka Ks Ka/Ks
Gh_A10G1402 GhARF1_A A10 Cotton_A_31395 GaARF1 CA_chr1 0.0147 0.0261 0.5632
Gh_D10G0803 GhARF1_D D10 Gorai.011G091100.1 GrARF1 Chr11 0.0019 0.0108 0.1759
Gh_A07G0411 GhARF2a_A A07 Cotton_A_03644 GaARF2a CA_chr1 0.0035 0.0068 0.5147
Gh_D07G0476 GhARF2a_D D07 Gorai.001G054600.1 GrARF2a Chr1 0.0061 0.0169 0.3609
Gh_A11G0358 GhARF2b_A A11 Cotton_A_01955 GaARF2b CA_chr6 0.0015 0.0151 0.0993
Gh_D11G0416 GhARF2b_D D11 Gorai.007G044900.1 GrARF2b Chr7 0.0028 0.0045 0.6222
Gh_D12G1909 GhARF2c_D D12 Gorai.008G210200.1 GrARF2c Chr8 0.0083 0.0263 0.3156
Gh_A11G1082 GhARF2d_A A11 Cotton_A_08273 GaARF2d CA_chr4 0.0012 0.0021 0.5714
Gh_D11G1233 GhARF2d_D D11 Gorai.007G131900.1 GrARF2d Chr7 0.0058 0.0181 0.3204
Gh_A08G0656 GhARF2e_A A08 Cotton_A_22543 GaARF2e CA_chr10 0.0032 0.0000 2.0000
Gh_D08G0758 GhARF2e_D D08 Gorai.004G085400.1 GrARF2e Chr4 0.0098 0.0213 0.4601
Gh_A10G0266 GhARF3a_A A10 Cotton_A_03933 GaARF3a CA_chr9 0.0096 0.0167 0.5749
Gh_D10G0266 GhARF3a_D D10 Gorai.011G030900.1 GrARF3a Chr11 0.0038 0.0125 0.3040
Gh_A06G2038 GhARF3b_A A06 Cotton_A_40208 GaARF3b CA_chr8 0.0019 0.0060 0.3167
Gh_D06G1415 GhARF3b_D D06 Gorai.010G157400.1 GrARF3b Chr10 0.0089 0.0077 1.1558
Gh_A05G1337 GhARF3c_A A05 Cotton_A_11311 GaARF3c CA_chr10 0.0165 0.0140 1.1786
Gh_D05G1506 GhARF3c_D D05 Gorai.009G166100.1 GrARF3c Chr9 0.0018 0.0076 0.2368
Gh_A09G0993 GhARF4a_A A09 Cotton_A_01738 GaARF4a CA_chr11 0.0017 0.0116 0.1466
Gh_A05G3908 GhARF4b_A A05 Cotton_A_11048 GaARF4b CA_chr10 0.0027 0.0018 1.5000
Gh_A01G0908 GhARF5a_A A01 Cotton_A_27669 GaARF5a CA_chr13 0.0009 0.0110 0.0818
Gh_D01G0951 GhARF5a_D D01 Gorai.002G124400.1 GrARF5a Chr2 0.0032 0.0094 0.3404
Gh_A05G1607 GhARF5b_A A05 Cotton_A_16408 GaARF5b CA_chr8 0.0046 0.0079 0.5823
Gh_D05G1792 GhARF5b_D D05 Gorai.009G196100.1 GrARF5b Chr9 0.0067 0.0172 0.3895
Gh_A10G0412 GhARF6a_A A10 Cotton_A_02933 GaARF6a CA_chr9 0.0038 0.0159 0.2390
Gh_D10G0426 GhARF6a_D D10 Gorai.011G048200.1 GrARF6a Chr11 0.0019 0.0047 0.4043
Gh_A05G1225 GhARF6b_A A05 Cotton_A_26156 GaARF6b CA_chr10 0.0034 0.0095 0.3579
Gh_D05G3848 GhARF6b_D D05 Gorai.009G152700.1 GrARF6b Chr9 0.0107 0.0205 0.5220
Gh_D07G1785 GhARF8a_D D07 Gorai.001G204500.1 GrARF8a Chr1 0.0028 0.0091 0.3077
Gh_A12G0813 GhARF8b_A A12 Cotton_A_35443 GaARF8b CA_chr6 0.0017 0.0054 0.3148
Gh_D12G0831 GhARF8b_D D12 Gorai.008G097200.1 GrARF8b Chr8 0.0039 0.0049 0.7959
Gh_A12G0483 GhARF8c_A A12 Cotton_A_21333 GaARF8c CA_chr6 0.0235 0.0303 0.7756
Gh_D12G0491 GhARF8c_D D12 Gorai.008G054600.1 GrARF8c Chr8 0.0061 0.0167 0.3653
Gh_A09G0074 GhARF8d_A A09 Cotton_A_14740 GaARF8d CA_chr11 0.0030 0.0131 0.2290
Gh_D09G0071 GhARF8d_D D09 Gorai.006G008700.1 GrARF8d Chr6 0.0031 0.0150 0.2067
Gh_A11G0231 GhARF9a_A A11 Cotton_A_18937 GaARF9a CA_chr10 0.0108 0.0301 0.3588
Gh_D11G0245 GhARF9a_D D11 Gorai.007G026900.1 GrARF9a Chr7 0.0098 0.0198 0.4949
Gh_A02G0979 GhARF9b_A A02 Cotton_A_36154 GaARF9b CA_chr7 0.0013 0.0044 0.2955
Gh_D03G0771 GhARF9b_D D03 Gorai.003G078000.1 GrARF9b Chr3 0.0019 0.0064 0.2969
Gh_A03G0274 GhARF10a_A A03 Cotton_A_04263 GaARF10a CA_chr7 0.0013 0.0062 0.2097
Gh_D03G1293 GhARF10a_D D03 Gorai.003G142500.1 GrARF10a Chr3 0.0058 0.0171 0.3392
Gh_A05G0895 GhARF10b_A A05 Cotton_A_07064 GaARF10b CA_chr10 0.0038 0.0102 0.3725
Gh_D05G0978 GhARF10b_D D05 Gorai.009G107800.1 GrARF10b Chr9 0.0025 0.0185 0.1351
Gh_A07G1254 GhARF11_A A07 Cotton_A_31049 GaARF11 CA_chr1 0.0044 0.0105 0.4190
Gh_A10G1836 GhARF16a_A A10 Cotton_A_23397 GaARF16a CA_chr9 0.0019 0.0150 0.1267
Gh_D10G2093 GhARF16a_D D10 Gorai.011G238900.1 GrARF16a Chr11 0.0063 0.0193 0.3264
Gh_A05G3576 GhARF16b_A A05 Cotton_A_06107 GaARF16b CA_chr12 0.0097 0.0066 1.4697
Gh_D04G0030 GhARF16b_D D04 Gorai.012G004800.1 GrARF16b Chr12 0.0051 0.0087 0.5862
Gh_A09G1401 GhARF16c_A A09 Cotton_A_24047 GaARF16c CA_chr10 0.0031 0.0103 0.3010
Gh_D09G1405 GhARF16c_D D09 Gorai.006G166400.1 GrARF16c Chr6 0.0025 0.0081 0.3086
Gh_A13G2013 GhARF16d_A A13 Cotton_A_10518 GaARF16d CA_chr8 0.0080 0.0109 0.7339
Gh_D13G2411 GhARF16d_D D13 Gorai.013G267100.1 GrARF16d Chr13 0.0041 0.0223 0.1839
Gh_A05G1991 GhARF17a_A A05 Cotton_A_16138 GaARF17a CA_chr10 0.0030 0.0243 0.1235
Gh_D05G3805 GhARF17a_D D05 Gorai.009G241900.1 GrARF17a Chr9 0.0015 0.0121 0.1240
Gh_A06G0332 GhARF17b_A A06 Cotton_A_18446 GaARF17b CA_chr8 0.0030 0.0025 1.2000
Gh_D06G0360 GhARF17b_D D06 Gorai.010G046000.1 GrARF17b Chr10 0.0076 0.0099 0.7677
Gh_A11G0886 GhARF18a_A A11 Cotton_A_14407 GaARF18a CA_chr4 0.0041 0.0074 0.5541
Gh_D11G1034 GhARF18a_D D11 Gorai.007G109500.1 GrARF18a Chr7 0.0057 0.0133 0.4286
Gh_A12G1016 GhARF18b_A A12 Cotton_A_25871 GaARF18b CA_chr6 0.0045 0.0150 0.3000
Gh_D12G1134 GhARF18b_D D12 Gorai.008G126200.1 GrARF18b Chr8 0.0026 0.0201 0.1294
Gh_A06G0710 GhARF19.1a_A A06 Cotton_A_38575 GaARF19.1a CA_chr13 0.0048 0.0130 0.3692
Gh_D06G0818 GhARF19.1a_D D06 Gorai.010G091300.1 GrARF19.1a Chr10 0.0293 0.0343 0.8542
Gh_A07G2353 GhARF19.1b_A A07 Cotton_A_05677 GaARF19.1b CA_chr1 0.0042 0.0218 0.1927
Gh_D07G0132 GhARF19.1b_D D07 Gorai.001G017000.1 GrARF19.1b Chr1 0.0032 0.0113 0.2832
Gh_A05G3541 GhARF19.2_A A05 Cotton_A_06071 GaARF19.2 CA_chr12 0.0148 0.0254 0.5827
Gh_D04G0067 GhARF19.2_D D04 Gorai.012G009000.1 GrARF19.2 Chr12 0.0039 0.0040 0.9750
Gh_A05G0264 GhARF20_A A05 Cotton_A_27843 GaARF20 CA_chr9 0.0020 0.0121 0.1653
Gh_D08G1407 GhARF21_D D08 Gorai.006G045300.1 GrARF21 Chr6 0.1826 0.2293 0.7963
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