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Table 1 Comparison of the OKI2018_I69 assembly with the previously published O. dioica genomes

From: Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing

 

OdB3

OSKA2016

OKI2018_I69

Geographical origin

Bergen, Norway (North Atlantic)

Hyogo, Japan (Western Pacific)

Okinawa, Japan (Ryukyu archipelago)

Assembly length (Mbp)

70.4

65.6

64.3

Number of scaffolds

1260

576

19

Longest scaffold (Mbp)

3.2

6.8

17.1

Scaffold N50 (Mbp)

0.4

1.5

16.2

Number of contigs

5917

746

42

Contig N50 (Mbp)

0.02

0.6

4.7

GC content (%)

39.77

41.34

41.06

Gap rate (%)

5.589

0.585

0.034

Complete BUSCOs (%)

70.8

71.7

73.01