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Table 1 Maize JAZ family

From: Identification and evolution analysis of the JAZ gene family in maize

Synonyma Protein name Accession no. Binb Splc Group TIFY motif Jas motif Locd Orge Staf QTLg
ZmJAZ1a ZmZIM28 GRMZM2G116614 7.02 2 II TIFYGG SLHRFLEKRKDRITAKAPY N l V SWCB
ZmJAZ1b ZmZIM13 GRMZM2G005954 2.06 2 II TIFYGG SLHRFLEKRKDRITAKAPY N l V  
ZmJAZ2a ZmZIM34 GRMZM2G143402 10.07 3 II TIFYGG SLQRFLEKRRDRVVSKAPY N r V  
ZmJAZ2b ZmZIM32 GRMZM2G086920 2.02 2 II TIFYGG SLQRFLEKRRDRVVSKAPY N h,s R FAW
ZmJAZ3–1a ZmZIM23 GRMZM2G089736 7.04 2 II TIFYGG SLHRFLEKRKDRLNAKTPY N l V FAW
ZmJAZ3–1b ZmZIM12 GRMZM2G101769 2.08 1 II TIFYGG SLHRFLEKRKDRLNANAPY CP Na Na FAW
ZmJAZ3–2 ZmZIM24 GRMZM2G117513 1.04 1 II TIFYGG SLRRFLEKRKDRLTAKAPY N l V  
ZmJAZ4–1a ZmZIM16 GRMZM2G445634 1.02 1 II TIFYGG SLQRFLAKRKDRLVERAPY N r V FAW
ZmJAZ4–1b ZmZIM4 GRMZM2G036351 9.07 1 II TIFYGG SLQRFLAKRKDRLVERAPY N r V  
ZmJAZ4–2 ZmZIM27 GRMZM5G838098 1.02 3 II TIFYGG SLKRFLEKRKNRLTAADPY CP p R FAW
ZmJAZ4–3 ZmZIM9 GRMZM2G338829 6.01 1 II TIFYGG SLPWFLTKRKDRLVERAPY N Na Na  
ZmJAZ4–4 ZmZIM19 GRMZM2G382794 1.11 1 II TIFYGG SLPWFLAKRKDRLVERAPY CP Na Na SWCB
ZmJAZ4–5 ZmZIM31 GRMZM2G066020 7.03 1 II TIFYGG SLPWFLAKRKDRLVERAPY G gs V FAW
ZmJAZ5–1a ZmZIM1 GRMZM2G126507 7.02 2 II TIFYAG SLARFLEKRKERVTTAAPY N l V SWCB
ZmJAZ5–1b ZmZIM15 GRMZM2G114681 2.06 2 II TIFYAG SLARFLEKRKERVTTAAPY N a R,V  
ZmJAZ5–2 ZmZIM35 GRMZM2G151519 4.05 2 II TIFYNG SLARFLEKRKERVASVEPY N h R  
  1. a Nomenclature of JAZ subfamily was based on the conserved domains, possible paralogous proteins were grouped togather based on maizesequence.org
  2. b Chromosome number and bin location from maizeGDB
  3. c Number of putative splicing pattern based on maizesequence.org
  4. d Subcellular localization predicted by Protcomp from Softberry: CP chloroplast, G golgi, N nuclear
  5. e Organs with highest expression from maizeGBD: a anthers, gs germinating seed, h husk, l leaf, Na not available, p, pericap, r, root, s seed, t tassel
  6. f Developmental stage with highest expression from maizeGDB: V vegetative, R reproductive, Na not available
  7. g QTLs for insect resistance to FAW and SWCB (Brooks et al., 2007)