Identification and evolution analysis of the JAZ gene family in maize

BMC Genomics

Table 1 Maize JAZ family

Synonym^a	Protein name	Accession no.	Bin^b	Spl^c	Group	TIFY motif	Jas motif	Loc^d	Org^e	Sta^f	QTL^g
ZmJAZ1a	ZmZIM28	GRMZM2G116614	7.02	2	II	TIFYGG	SLHRFLEKRKDRITAKAPY	N	l	V	SWCB
ZmJAZ1b	ZmZIM13	GRMZM2G005954	2.06	2	II	TIFYGG	SLHRFLEKRKDRITAKAPY	N	l	V
ZmJAZ2a	ZmZIM34	GRMZM2G143402	10.07	3	II	TIFYGG	SLQRFLEKRRDRVVSKAPY	N	r	V
ZmJAZ2b	ZmZIM32	GRMZM2G086920	2.02	2	II	TIFYGG	SLQRFLEKRRDRVVSKAPY	N	h,s	R	FAW
ZmJAZ3–1a	ZmZIM23	GRMZM2G089736	7.04	2	II	TIFYGG	SLHRFLEKRKDRLNAKTPY	N	l	V	FAW
ZmJAZ3–1b	ZmZIM12	GRMZM2G101769	2.08	1	II	TIFYGG	SLHRFLEKRKDRLNANAPY	CP	Na	Na	FAW
ZmJAZ3–2	ZmZIM24	GRMZM2G117513	1.04	1	II	TIFYGG	SLRRFLEKRKDRLTAKAPY	N	l	V
ZmJAZ4–1a	ZmZIM16	GRMZM2G445634	1.02	1	II	TIFYGG	SLQRFLAKRKDRLVERAPY	N	r	V	FAW
ZmJAZ4–1b	ZmZIM4	GRMZM2G036351	9.07	1	II	TIFYGG	SLQRFLAKRKDRLVERAPY	N	r	V
ZmJAZ4–2	ZmZIM27	GRMZM5G838098	1.02	3	II	TIFYGG	SLKRFLEKRKNRLTAADPY	CP	p	R	FAW
ZmJAZ4–3	ZmZIM9	GRMZM2G338829	6.01	1	II	TIFYGG	SLPWFLTKRKDRLVERAPY	N	Na	Na
ZmJAZ4–4	ZmZIM19	GRMZM2G382794	1.11	1	II	TIFYGG	SLPWFLAKRKDRLVERAPY	CP	Na	Na	SWCB
ZmJAZ4–5	ZmZIM31	GRMZM2G066020	7.03	1	II	TIFYGG	SLPWFLAKRKDRLVERAPY	G	gs	V	FAW
ZmJAZ5–1a	ZmZIM1	GRMZM2G126507	7.02	2	II	TIFYAG	SLARFLEKRKERVTTAAPY	N	l	V	SWCB
ZmJAZ5–1b	ZmZIM15	GRMZM2G114681	2.06	2	II	TIFYAG	SLARFLEKRKERVTTAAPY	N	a	R,V
ZmJAZ5–2	ZmZIM35	GRMZM2G151519	4.05	2	II	TIFYNG	SLARFLEKRKERVASVEPY	N	h	R

^a Nomenclature of JAZ subfamily was based on the conserved domains, possible paralogous proteins were grouped togather based on maizesequence.org
^b Chromosome number and bin location from maizeGDB
^c Number of putative splicing pattern based on maizesequence.org
^d Subcellular localization predicted by Protcomp from Softberry: CP chloroplast, G golgi, N nuclear
^e Organs with highest expression from maizeGBD: a anthers, gs germinating seed, h husk, l leaf, Na not available, p, pericap, r, root, s seed, t tassel
^f Developmental stage with highest expression from maizeGDB: V vegetative, R reproductive, Na not available
^g QTLs for insect resistance to FAW and SWCB (Brooks et al., 2007)

ISSN: 1471-2164