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Table 4 Biological significance of gene set that aid in prediction of BRCA survival and drug response

From: Deep learning assisted multi-omics integration for survival and drug-response prediction in breast cancer

GENE

NAME

Reported Biomarker function

EFHD1

EF-Hand Domain Family Member D1

Part of digital RNA resistance signature to predict response to breast cancer therapy [31]

CDH1

Cadherin 1

CDH1 structural alterations as novel prognostic biomarker in gastric cancer patients [32]

CDH1 gene as a prognostic biomarker in hepatocellular carcinoma [33]

PIK3CA

Phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha

PIK3CA is a predictive biomarker for use of alpelisib and fulvestrant in BRCA patients [34]

TP53

 

mutant p53 as a possible therapeutic target and biomarker for breast cancer [35]