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Fig. 6 | BMC Genomics

Fig. 6

From: A tail of two pandas— whole genome k-mer signature analysis of the red panda (Ailurus fulgens) and the Giant panda (Ailuropoda melanoleuca)

Fig. 6

Hierarchical tree inferred using the Maximum Likelihood method and Tamura-Nei model using the MEGA-X software. The tree with the highest log likelihood (− 251,658.67) is shown. Initial tree(s) for the heuristic search were obtained automatically by applying Neighbor-Join and BioNJ algorithms to a matrix of pairwise distances estimated using the Tamura-Nei model, and then selecting the topology with superior log likelihood value. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. The proportion of sites where at least one unambiguous base is present in at least one sequence for each descendent clade is shown next to each internal node in the tree. This analysis involved 52 nucleotide sequences, with a total of 17,440 positions in the final dataset

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