Skip to main content

Table 1 T. fracticalcis DRI-13T Hybrid genome assembly comparison

From: Hybrid genome de novo assembly with methylome analysis of the anaerobic thermophilic subsurface bacterium Thermanaerosceptrum fracticalcis strain DRI-13T

Assembler Assembly Size Contigs Largest Contig Length GC Percentage Ambiguous Base Count Predicted Gene Count
Unicyclera 3,805,411 1 3,805,411 45.2% 0 2216
Flye 3,762,930 1 3,762,930 45.2% 0 2230
Canu 3,746,854 1 3,746,854 45.3% 0 2610
MaSuRCA 3,734,429 5 3,730,424 45.2% 100 2247
Spades-hybrid 3,917,015 171 3,697,741 45.0% 24,644 2254
SPAdes Illumina only 5,294,664 2060 192,791 42.2% 110 2933
Scaffold genome assemblyb 3,649,665 105 193,268 45.1% 265 2209
  1. aThis work
  2. bInformation acquired from Hamilton-Brehm et al. 2019 [1]