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Table 1 General genomic features of Spiroplasma ixodetis DO, DCF and DCM compared to othersinsect-associated Spiroplasma

From: Functional genomics of a Spiroplasma associated with the carmine cochineals Dactylopius coccus and Dactylopius opuntiae

Genome ID

S. ixodetis DO

S. ixodetis DCF

S. ixodetis

DCM

S. ixodetis WSS

Spiroplasma sp.

S. melliferum

S. sabaudiense

Number of scaffolds/contigs

258

286

353

145

12

6

1

Estimated genome size (Mb)

1.28

1.19

1.32

0.73

1.75

1.29

1.075

Average genomic coverage

1795x

1480x

1112x

0.727x

2000x

11x

600.8x

N50

8196

6014

7774

5160

265,779

741,187

NA

G + C content (%)

24.63

24.21

24.16

24.56

23.7

27.09

30.16

CDS genes

1260

1215

1371

649

1813

1297

933

rRNA (16S, 5S, 23S)

2(1,1,ND)

2(1,1,ND)

3(1,1,1)

NA

4(1,2,1)

3(1,1,1)

6(2,2,2)

tRNA

27

27

27

23

27

31

32

Genome completeness (%)a

95.5

92.5

94.7

77.8

95.5

98.1

100

Insect associated

Dactylopius opuntiae

Dactylopius coccus

Cephus cinctus

Danaus chrysippus

Apis mellifera

Aedes sp.

  1. The number of CDS genes, rRNA, tRNA for Dactylopius associated S. ixodetis was calculated using the Prokka annotation files. Otherwise, information was retrieved from the NCBI GenBank database
  2. aGenome completeness was calculated for all organisms with the checkM pipeline
  3. NA not available, ND not detected