Table 3 The annotation of SINEs copies integrated into CDS and untranslated regions (UTR) in P. xylostella
Copies | Location | GeneID | Gene mapping | COG class annotation | Swissprot annotation | Nr annotation |
|---|---|---|---|---|---|---|
PxSE1.1 | 436,420–436,680 | LOC105383591 | CDS | Signal transduction mechanisms | Cyclic nucleotide-gated cation channel subunit A | uncharacterized protein |
PxSE1.2 | 46,181–46,441 | LOC105394666 | CDS | Signal transduction mechanisms | Cyclic nucleotide-gated cation channel subunit A | uncharacterized protein |
PxSE2.1 | 800,671–800,788 | LOC105384210 | 3′ UTR | ND | Transcription factor 25 homolog | transcription factor 25 |
PxSE2.2 | 2,273,356–2,273,095 | LOC105380419 | CDS | ND | Nitrogen permease regulator 3-like protein | nitrogen permease regulator 3-like protein |
PxSE2.3 | 35,405–35,544 | LOC105390425 | 3′ UTR | ND | Serine/threonine-protein kinase | serine/threonine-protein kinase grp-like |
PxSE2.4 | 250,511–250,756 | LOC105381765 | CDS | Replication, recombination and repair | DNA topoisomerase 3-alpha | uncharacterized protein |
PxSE2.5 | 266,277–266,424 | LOC105391817 | 3′ UTR | ND | Leucine-rich repeat serine/threonine-protein kinase 1 | uncharacterized protein |
PxSE3.1 | 274,387–274,287 | LOC105388973 | 3′ UTR | ND | Gamete and mating-type specific protein A | uncharacterized protein |
PxSE3.2 | 699,462–699,145 | LOC105386775 | CDS | ND | Uncharacterized protein | serine/arginine repetitive matrix protein 1-like |
PxSE3.3 | 490,234–490,329 | LOC105381296 | 3′ UTR | ND | Venom acid phosphatase Acph-1 (Precursor) | prostatic acid phosphatase |
PxSE3.4 | 149,472–149,747 | LOC105389005 | 3′ UTR | General function prediction only | Protein suppressor of hairy wing | zinc finger protein 26-like |
PxSE3.5 | 165,558–165,422 | LOC105383366 | CDS | ND | Mediator of RNA polymerase II transcription subunit 12 | uncharacterized protein |
PxSE4.1 | 1,260,998–1,260,894 | LOC105380733 | 3′ UTR | General function prediction only | Ras-related protein Rab-24 | ras-related protein Rab-24-like |
PxSE4.2 | 63,533–63,636 | LOC105391976 | 3′ UTR | General function prediction only | Protein fem-1 homolog B | protein fem-1 homolog B |
PxSE4.3 | 31,764–31,620 | LOC105393953 | 3′ UTR | General function prediction only | Ras-related protein Rab-24 | ras-related protein Rab-24-like |
PxSE4.4 | 787,511–787,311 | LOC105382052 | 3′ UTR | RNA processing and modification | WW domain-containing protein ZK1098.1 | transcription elongation regulator 1-like isoform X1 |
PxSE4.5 | 160,917–160,809 | LOC105388357 | CDS | ND | Serine/threonine kinase SAD-1 | PAS domain-containing serine/threonine-protein kinase |
PxSE4.6 | 1,160,410–1,160,304 | LOC105398290 | 3′ UTR | General function prediction only | Ras-related protein Rab-24 | ras-related protein Rab-24-like |
PxSE4.7 | 819,669–819,771 | LOC105385258 | CDS | ND | Probable 4-coumarate-CoA ligase 2 | probable 4-coumarate-CoA ligase 3 |
PxSE4.8 | 217,956–218,125 | LOC105383715 | CDS | ND | Integrin alpha-PS3 light chain (Precursor) | integrin alpha-PS5-like |
PxSE5.1 | 306,942–307,066 | LOC105398401 | 5′ UTR | ND | ND | CLK4-associating serine/arginine rich protein-like |
PxSE5.2 | 101,368–101,480 | LOC105393324 | CDS | Coenzyme transport and metabolism | Molybdopterin synthase catalytic subunit | molybdopterin synthase catalytic subunit-like |
PxSE5.3 | 993,048–992,940 | LOC105383883 | CDS | ND | Salivary glue protein Sgs-3 (Precursor) | uncharacterized protein |
PxSE5.4 | 338,901–338,769 | LOC105387600 | 3′ UTR | ND | Alpha-(1,3)-fucosyltransferase C | alpha-(1,3)-fucosyltransferase C-like |
PxSE5.5 | 499,158–499,032 | LOC105388075 | 3′ UTR | ND | Cuticle collagen 1 (Precursor) | breast cancer metastasis-suppressor 1-like protein isoform X1 |