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Table 2 Categorization of Detected Variations in qPHS4.1 and qPHS5.1

From: Identification of a major-effect QTL associated with pre-harvest sprouting in cucumber (Cucumis sativus L.) using the QTL-seq method

Category

qPHS4.1

qPHS5.1

SNPs

InDels

SNPs

InDels

Exonic

Synonymous

4

0

  

Non-Synonymous

6

0

  

Non-Frameshift Insertion

–

1

  

Intronic

70

19

  

Upstream

39

9

 

2

Downstream

47

10

  

Upstream/Downstream

5

1

  

Intergenic

272

82

  

transition

277

–

  

transversion

166

–

  

Insertion

–

62

  

Deletion

–

62

  

Total

443

124

  
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BMC Genomics

ISSN: 1471-2164

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