Table 4 Candidate Genes Underlying qPHS4.1 Control of Preharvest Sprouting in Cucumber
Gene ID | SNP location | SNP locus | Physical position (bp) | Mutation | Functional prediction | |
|---|---|---|---|---|---|---|
Q12 | P60 | |||||
Csa4G622760 | upstream | SNP-14 | 19,973,692 | G | T | Chalcone isomerase-like protein |
upstream | SNP-15 | 19,973,724 | C | A | ||
upstream | SNP-16 | 19,973,741 | T | C | ||
upstream | SNP-17 | 19,973,782 | A | T | ||
Csa4G622800 | upstream | SNP-18 | 19,995,077 | A | G | Peptide methionine sulfoxide reductase msrB |
upstream | SNP-19 | 19,995,107 | G | A | ||
upstream | SNP-20 | 19,995,109 | C | G | ||
upstream | SNP-21 | 19,995,123 | A | C | ||
upstream | SNP-22 | 19,995,137 | C | A | ||
Csa4M628930.1 | nonsynonymous | SNP-23 | 20,505,510 | T | C | ERI1 exoribonuclease 3 |