Skip to main content

Table 1 Characteristics of genome assembly and annotation of Phytophthora cinnamomi

From: Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential

 Assembled genome size (Mb) 109.7
 Gaps (Mb) 0.34
 GC Content (%) 54
 No. of Scaffolds 133
 N50 (Mb) 1.18
 L50 30
 Longest scaffold (Mb) 4.55
 BUSCO (%) 97.5
 Number of predicted genes 19,981
 Number of genes with alternative spliced variants 1188
 Number of secreted proteins 1347
 Mean gene length 1851
 Mean exons per CDS 2.5
Pathogenicity-related genes
 RxLR effectors 181
 Crinklers 49
 NLPs 61