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Table 1 Characteristics of genome assembly and annotation of Phytophthora cinnamomi

From: Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential

Assembly

 Assembled genome size (Mb)

109.7

 Gaps (Mb)

0.34

 GC Content (%)

54

 No. of Scaffolds

133

 N50 (Mb)

1.18

 L50

30

 Longest scaffold (Mb)

4.55

 BUSCO (%)

97.5

Annotation

 Number of predicted genes

19,981

 Number of genes with alternative spliced variants

1188

 Number of secreted proteins

1347

 Mean gene length

1851

 Mean exons per CDS

2.5

Pathogenicity-related genes

 RxLR effectors

181

 Crinklers

49

 NLPs

61