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Table 5 SNPs in high or moderate effect categories

From: Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

 

ARS-UCD1.2

UOA_Angus_1

Missense variant*

86,634

99,773

Stop gained

1,466

1,911

Splice donor variant

506

525

Splice acceptor variant

345

395

Start lost

271

319

Stop lost

155

218

  1. Number of SNPs in high and moderate (marked with an asterisk) effect categories per assembly
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BMC Genomics

ISSN: 1471-2164

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