Table 1 List of 26 genes that exhibit a significant change in both m6A modification and mRNA expression related to muscle development in Dingan Goose embryonic breast muscle tissues
Gene name | Pattern | Transcript ID | m6A level change | mRNA level change | Number of miRNAs | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Scaffold ID | Peak region | Peak start | peak end | Fold enrichment | Fold change | P-value | Strand | ||||
GATM | Hypo-up | XM_013192762.1 | 146 | 3′ UTR | 2,140,850 | 2,141,805 | 24.60 | 8.03 | 0.00 | – | 15 |
NCK2 | Hyper-down | XM_013190212.1 | 109 | 3′ UTR | 949,166 | 979,207 | 10.40 | 0.38 | 0.01 | – | 0 |
ITM2A | Hypo-up | XM_013192251.1 | 137 | 3′ UTR | 1,084,601 | 1,090,313 | 7.64 | 2.54 | 0.00 | – | 13 |
IGFBP4 | Hyper-down | XM_013201934.1 | 397 | 3′ UTR | 141,061 | 141,330 | 6.26 | 0.27 | 0.00 | – | 12 |
NUTF2 | Hyper-down | XM_013176707.1 | 24 | 3′ UTR | 1,258,529 | 1,271,420 | 5.64 | 0.29 | 0.00 | – | 6 |
ARPC3 | Hyper-down | XM_013173349.1 | 14 | 5′ UTR | 2,545,265 | 2,548,951 | 5.45 | 0.34 | 0.00 | – | 7 |
PDK3 | Hypo-up | XM_013183853.1 | 63 | 3′ UTR | 4,436,884 | 4,444,805 | 5.16 | 6.03 | 0.00 | + | 53 |
SOD2 | Hypo-up | XM_013186750.1 | 81 | 3′ UTR | 3,472,567 | 3,479,935 | 4.92 | 2.03 | 0.00 | + | 13 |
CTNND1 | Hyper-down | XM_013177609.1 | 27 | 3′ UTR | 84,757 | 85,585 | 4.28 | 0.35 | 0.00 | + | 0 |
ARF6 | Hyper-down | XM_013202366.1 | 448 | 3′ UTR | 77,809 | 78,102 | 3.52 | 0.43 | 0.00 | – | 0 |
PITPNA | Hypo-up | XM_013189960.1 | 106 | 3′ UTR | 265,238 | 265,538 | 3.17 | 2.18 | 0.00 | + | 40 |
GAA | Hyper-down | XM_013197895.1 | 238 | 3′ UTR | 407,125 | 408,007 | 2.88 | 0.38 | 0.00 | – | 3 |
SIX2 | Hyper-down | XM_013200196.1 | 7 | 3′ UTR | 15,156,668 | 15,156,993 | 2.83 | 0.44 | 0.00 | + | 9 |
TUBB6 | Hyper-down | XM_013179395.1 | 35 | Exon | 4,262,506 | 4,267,545 | 2.67 | 0.26 | 0.00 | + | 1 |
ATIC | Hyper-down | XM_013178608.1 | 32 | 3′ UTR | 2,630,113 | 2,630,231 | 2.56 | 0.21 | 0.00 | – | 4 |
SH3PXD2B | Hyper-down | XM_013191841.1 | 133 | Exon | 1,227,288 | 1,227,527 | 2.30 | 0.35 | 0.00 | + | 0 |
UGP2 | Hypo-up | XM_013196193.1 | 204 | Exon | 1,588,652 | 1,589,768 | 2.24 | 4.42 | 0.00 | + | 14 |
TMEM182 | Hypo-up | XM_013190208.1 | 109 | Exon | 2,308,663 | 2,332,173 | 2.21 | 4.27 | 0.00 | – | 0 |
POMGNT1 | Hyper-down | XM_013176172.1 | 23 | 3′ UTR | 7,368,724 | 7,369,199 | 2.02 | 0.45 | 0.00 | + | 6 |
FOXK2 | Hypo-up | XM_013198434.1 | 247 | 5′ UTR | 779,207 | 780,467 | 2.00 | 2.77 | 0.00 | – | 0 |
CIZ1 | Hyper-down | XM_013198642.1 | 251 | Exon | 830,940 | 836,624 | 1.97 | 0.32 | 0.00 | – | 0 |
BACE1 | Hyper-down | XM_013187092.1 | 84 | 3′ UTR | 2,785,912 | 2,786,031 | 1.61 | 0.29 | 0.00 | + | 19 |
CLP1 | Hyper-down | XM_013177584.1 | 27 | Exon | 31,856 | 32,213 | 1.58 | 0.24 | 0.00 | + | 0 |
DSTN | Hyper-down | XM_013194951.1 | 180 | 3′ UTR | 909,963 | 910,170 | 1.54 | 0.25 | 0.00 | + | 23 |
MMP15 | Hyper-down | XM_013176746.1 | 24 | Exon | 1,895,816 | 1,896,024 | 1.42 | 0.47 | 0.00 | – | 7 |
PODXL | Hypo-up | XM_013185434.1 | 72 | 3′ UTR | 2,083,223 | 2,083,492 | 1.35 | 2.06 | 0.00 | + | 1 |