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Table 1 List of 26 genes that exhibit a significant change in both m6A modification and mRNA expression related to muscle development in Dingan Goose embryonic breast muscle tissues

From: Transcriptome-wide study revealed m6A regulation of embryonic muscle development in Dingan goose (Anser cygnoides orientalis)

Gene name Pattern Transcript ID m6A level change mRNA level change Number of miRNAs
Scaffold ID Peak region Peak start peak end Fold enrichment Fold change P-value Strand
GATM Hypo-up XM_013192762.1 146 3′ UTR 2,140,850 2,141,805 24.60 8.03 0.00 15
NCK2 Hyper-down XM_013190212.1 109 3′ UTR 949,166 979,207 10.40 0.38 0.01 0
ITM2A Hypo-up XM_013192251.1 137 3′ UTR 1,084,601 1,090,313 7.64 2.54 0.00 13
IGFBP4 Hyper-down XM_013201934.1 397 3′ UTR 141,061 141,330 6.26 0.27 0.00 12
NUTF2 Hyper-down XM_013176707.1 24 3′ UTR 1,258,529 1,271,420 5.64 0.29 0.00 6
ARPC3 Hyper-down XM_013173349.1 14 5′ UTR 2,545,265 2,548,951 5.45 0.34 0.00 7
PDK3 Hypo-up XM_013183853.1 63 3′ UTR 4,436,884 4,444,805 5.16 6.03 0.00 + 53
SOD2 Hypo-up XM_013186750.1 81 3′ UTR 3,472,567 3,479,935 4.92 2.03 0.00 + 13
CTNND1 Hyper-down XM_013177609.1 27 3′ UTR 84,757 85,585 4.28 0.35 0.00 + 0
ARF6 Hyper-down XM_013202366.1 448 3′ UTR 77,809 78,102 3.52 0.43 0.00 0
PITPNA Hypo-up XM_013189960.1 106 3′ UTR 265,238 265,538 3.17 2.18 0.00 + 40
GAA Hyper-down XM_013197895.1 238 3′ UTR 407,125 408,007 2.88 0.38 0.00 3
SIX2 Hyper-down XM_013200196.1 7 3′ UTR 15,156,668 15,156,993 2.83 0.44 0.00 + 9
TUBB6 Hyper-down XM_013179395.1 35 Exon 4,262,506 4,267,545 2.67 0.26 0.00 + 1
ATIC Hyper-down XM_013178608.1 32 3′ UTR 2,630,113 2,630,231 2.56 0.21 0.00 4
SH3PXD2B Hyper-down XM_013191841.1 133 Exon 1,227,288 1,227,527 2.30 0.35 0.00 + 0
UGP2 Hypo-up XM_013196193.1 204 Exon 1,588,652 1,589,768 2.24 4.42 0.00 + 14
TMEM182 Hypo-up XM_013190208.1 109 Exon 2,308,663 2,332,173 2.21 4.27 0.00 0
POMGNT1 Hyper-down XM_013176172.1 23 3′ UTR 7,368,724 7,369,199 2.02 0.45 0.00 + 6
FOXK2 Hypo-up XM_013198434.1 247 5′ UTR 779,207 780,467 2.00 2.77 0.00 0
CIZ1 Hyper-down XM_013198642.1 251 Exon 830,940 836,624 1.97 0.32 0.00 0
BACE1 Hyper-down XM_013187092.1 84 3′ UTR 2,785,912 2,786,031 1.61 0.29 0.00 + 19
CLP1 Hyper-down XM_013177584.1 27 Exon 31,856 32,213 1.58 0.24 0.00 + 0
DSTN Hyper-down XM_013194951.1 180 3′ UTR 909,963 910,170 1.54 0.25 0.00 + 23
MMP15 Hyper-down XM_013176746.1 24 Exon 1,895,816 1,896,024 1.42 0.47 0.00 7
PODXL Hypo-up XM_013185434.1 72 3′ UTR 2,083,223 2,083,492 1.35 2.06 0.00 + 1
  1. UTR Untranslated region