Table 2 Composition of repetitive sequences in the Altica viridicyanea genome assembly
From: The draft genome of the specialist flea beetle Altica viridicyanea (Coleoptera: Chrysomelidae)
Repeat type | Number of elements | Length (bp) | Rate (%) |
|---|---|---|---|
Retrotransposons (transposable element class I) | 1,033,903 | 356,902,348 | 41.27 |
 DIRS | 12,458 | 7,468,113 | 0.86 |
 LINE | 3,17,300 | 97,559,643 | 11.28 |
 LTR/uncertain | 45,604 | 28,406,497 | 3.28 |
 LTR/Copia | 15,362 | 7,752,670 | 0.9 |
 LTR/Gypsy | 143,535 | 83,332,210 | 9.64 |
 LTR or DIRS | 91 | 14,310 | 0 |
 PLE or LARD | 485,362 | 155,872,484 | 18.02 |
 SINE | 78 | 80,868 | 0.01 |
 TRIM | 13,553 | 6,401,760 | 0.74 |
 Unknown | 560 | 58,144 | 0.01 |
DNA transposons (transposable element class II) | 803,681 | 226,943,053 | 26.24 |
 TIR | 550,895 | 150,574,911 | 17.41 |
 MITE | 10 | 635 | 0 |
 Crypton | 145,294 | 43,476,772 | 5.03 |
 Helitron | 29,008 | 8,403,268 | 0.97 |
 Maverick | 51,701 | 31,213,827 | 3.61 |
 Unknown | 26,773 | 5,423,361 | 0.63 |
SSR | 583 | 165,863 | 0.02 |
Unknown | 77,813 | 23,953,352 | 2.77 |
Total | 1,848,679 | 544,002,544 | 62.91 |