Table 3 Statistics of gene prediction of Altica viridicyanea
From: The draft genome of the specialist flea beetle Altica viridicyanea (Coleoptera: Chrysomelidae)
Method | Software | Gene number |
|---|---|---|
ab initio | Genscan v1.1.0 | 15,170 |
Augustus v2.4 | 31,813 | |
GlimmerHMM v3.0.4 | 58,872 | |
GeneID v1.4 | 14,970 | |
SNAP v2006-07-28 | 72,679 | |
homology-based | GeMoMa v1.3.1 | Â |
Drosophila melanogaster | 9310 | |
Tribolium castaneum | 14,234 | |
Dendroctonus ponderosae | 13,066 | |
Anoplophora glabripennis | 18,274 | |
transcriptome-based | TransDecoder v2.0 | 73,432 |
GeneMarkS-T v5.1 | 29,645 | |
PASA v2.0.2 | 23,200 | |
Integration | EVidenceModeler v1.1.1 | 17,730 |