Transcriptomic, proteomic and ultrastructural studies on salinity-tolerant Aedes aegypti in the context of rising sea levels and arboviral disease epidemiology

Ranjan Ramasamy; Vaikunthavasan Thiruchenthooran; Tibutius T. P. Jayadas; Thampoe Eswaramohan; Sharanga Santhirasegaram; Kokila Sivabalakrishnan; Arunasalam Naguleswaran; Marilyne Uzest; Bastien Cayrol; Sebastien N. Voisin; Philippe Bulet; Sinnathamby N. Surendran

doi:10.1186/s12864-021-07564-8

Table 2 Top Ten Cuticle Protein Transcripts by RPM in Carcass, Anal Papilla and Gut

From: Transcriptomic, proteomic and ultrastructural studies on salinity-tolerant Aedes aegypti in the context of rising sea levels and arboviral disease epidemiology

Carcass TOP 10 BW				Carcass TOP 10 FW
rpm	FC	Gene	Cuticle protein family	rpm	FC	Gene	Cuticle protein family
1626	0.6	Ribosomal S7	na	2561	0.6	Ribosomal S7	na
1725	143	AAEL015163^a	RR-2	1592	0.6	AAEL013512^a	RR-1
1626	351	AAEL009784^a	RR-2	1564	0.4	AAEL013520^a	RR-1
1522	708	AAEL009801^a	RR-2	1110	0.6	AAEL003239^b	RR-1
996	28	AAEL003049^b	RR-1	721	0.9	AAEL011444^a	RR-1
963	19	AAEL009793^a	RR-2	221	0.3	AAEL013517^a	RR-1
958	186	AAEL004780^a	RR-2	67	0.9	AAEL002110^b	RR-2
931	0.6	AAEL013512^a	RR-1	63	5	AAEL008289^a	RR-1
700	593	AAEL004746	RR-2	56	0.1	AAEL009796^a	RR-2
659	0.9	AAEL011444^a	RR-1	50	19	AAEL009793^a	RR-2
614	0.6	AAEL003239^b	RR-1	43	1	AAEL002231	CPLCG
Anal Papilla TOP 10 BW				Anal Papilla TOP 10 FW
rpm	FC	Gene	Cuticle protein family	rpm	FC	Gene	Cuticle protein family
1629	0.6	Ribosomal S7	na	2642	0.6	Ribosomal S7	na
1062	0.7	AAEL013512^a	RR-1	1594	0.7	AAEL013512^a	RR-1
1023	37	AAEL011504^a	RR-2	1585	0.6	AAEL011444^a	RR-1
921	0.6	AAEL011444^a	RR-1	1553	0.6	AAEL013520^a	RR-1
879	0.6	AAEL013520^a	RR-1	1183	0.7	AAEL003239^b	RR-1
793	0.7	AAEL003239^b	RR-1	1095	0.1	AAEL003242^a	RR-1
635	269	AAEL004746	RR-2	460	0.1	AAEL002211^b	CPLCG
543	1392	AAEL004770	RR-2	334	0.5	AAEL003049^b	RR-1
431	141	AAEL004745	RR-2	250	0.1	AAEL002229	CPLCG
203	520	AAEL004772	RR-2	198	0.04	AAEL002191^a	CPLCG
193	140	AAEL004751	RR-2	145	0.3	AAEL013517^a	RR-1
Gut top 10 BW				Gut top 10 FW
rpm	FC	Gene	Cuticle protein family	rpm	FC	Gene	Cuticle protein family
1911	0.7	Ribosomal S7	na	2657	0.7	Ribosomal S7	na
1230	1.3	AAEL013512^a	RR-1	1462	0.4	AAEL013520^a	RR-1
802	1.5	AAEL003239^b	RR-1	919	1.3	AAEL013512^a	RR-1
575	0.4	AAEL013520^a	RR-1	555	1.5	AAEL003239^b	RR-1
443	1.1	AAEL011444^a	RR-1	400	1.1	AAEL011444^a	RR-1
212	171	AAEL004770	RR-2	49	0.3	AAEL013517^a	RR-1
204	44	AAEL004746	RR-2	34	0.1	AAEL003242^a	RR-1
173	199	AAEL009001^b	RR-2	28	0.2	AAEL015163^a	RR-2
135	52	AAEL004745	RR-2	25	0.1	AAEL009801^a	RR-2
68	93	AAEL000085	CPX	14	0.7	AAEL007194^a	RR-1
66	11	AAEL011504^a	RR-2	14	0.5	AAEL009784^a	RR-2

Legend to Table 2: rpm reads per million mapped reads, FC fold change in rpm in BW compared to FW, na not applicable, S7 is the cytoplasmic 40S ribosomal protein coded for by its single transcript AAEL009496-RA; ^a detected by proteomic analysis in both shed L4 BW and FW cuticles; ^bdetected by proteomic analysis only in shed L4 BW cuticles

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ISSN: 1471-2164

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