Table 2 Summary of annotation results of the E. nipponicum transcriptome
Transcriptome annotation | |
Total number of annotated transcripts | 19,644 (53.0%) |
Number of transcripts homologue to nucleotide DDBJ database | 1342 (3.62%) |
Number of proteins homologous to entries in protein used databases | |
NCBI non-redundant (nr) protein database | 1533 (4.14%) |
RCSB PDB | 28 (0.08%) |
UniProtKB/Swiss-Prot | 131 (0.35%) |
UniProtKB/UniRef100 | 1886 (5.09%) |
UniProtKB/TrEMBL (phylum Platyhelminthes only) | 14,020 (37.83%) |
MEROPS peptidases | 555 (1.50%) |
MEROPS peptidase inhibitors | 149 (0.40%) |
Number of transcripts with assigned KO number | 7435 (20.06%) |
Number of unique KO numbers | 3499 |
Number of transcripts classified by InterProScan | 16,772 (45.25%) |
Number of transcripts with assigned GO term/s | 11,149 (30.08%) |
Number of unique GO terms | 1627 |
Biological process | 640 |
Cellular component | 267 |
Molecular function | 720 |
Analysis of excretory-secretory proteins | |
Number of ESP identified by mass spectrometry | 721 (1.95%) |